Detailed information NTG0071968

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JMH49_RS00560
• Genome accession: NZ_AP024270
• Coordinates: 106396..107466 (+)
• Length: 356 a.a.
• NCBI ID: WP_201351051.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain HB5018
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 101396..112466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMH49_RS00540 (TthHB5018_01040)	-	101904..102686 (+)	783	WP_201351049.1	RNA methyltransferase	-
JMH49_RS00545 (TthHB5018_01050)	groES	102784..103089 (+)	306	WP_011174076.1	co-chaperone GroES	-
JMH49_RS00550 (TthHB5018_01060)	groL	103102..104733 (+)	1632	WP_011174077.1	chaperonin GroEL	-
JMH49_RS00555 (TthHB5018_01070)	-	104797..106329 (-)	1533	WP_201351050.1	thermostable carboxypeptidase 1	-
JMH49_RS00560 (TthHB5018_01080)	pilD	106396..107466 (+)	1071	WP_201351051.1	A24 family peptidase	Machinery gene
JMH49_RS00565 (TthHB5018_01090)	-	107504..108007 (+)	504	WP_201351052.1	DUF2939 domain-containing protein	-
JMH49_RS00570 (TthHB5018_01100)	-	108021..108941 (+)	921	WP_011227819.1	nitroreductase family protein	-
JMH49_RS00575 (TthHB5018_01110)	-	108895..109692 (-)	798	WP_201351053.1	C40 family peptidase	-
JMH49_RS00580 (TthHB5018_01120)	-	109693..110451 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
JMH49_RS00585 (TthHB5018_01130)	recF	110436..111467 (-)	1032	WP_201351054.1	DNA replication/repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38009.27 Da
• Isoelectric Point: 7.7132

>NTDB_id=71968 JMH49_RS00560 WP_201351051.1 106396..107466(+) (pilD) [Thermus thermophilus strain HB5018]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=71968 JMH49_RS00560 WP_201351051.1 106396..107466(+) (pilD) [Thermus thermophilus strain HB5018]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTCCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCCGCCGGGGGGCTCGCCCTCGCCGGTGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (207-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.909	100	0.483