Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PBV52_RS26550 Genome accession   NZ_CP117866
Coordinates   5890805..5891404 (+) Length   199 a.a.
NCBI ID   WP_274241543.1    Uniprot ID   -
Organism   Streptomyces sp. T12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5885805..5896404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBV52_RS26535 (PBV52_26535) - 5887830..5889233 (+) 1404 WP_274241540.1 M20/M25/M40 family metallo-hydrolase -
  PBV52_RS26540 (PBV52_26540) - 5889288..5890049 (-) 762 WP_274241541.1 SLATT domain-containing protein -
  PBV52_RS26545 (PBV52_26545) - 5890349..5890711 (+) 363 WP_274241542.1 YbaB/EbfC family nucleoid-associated protein -
  PBV52_RS26550 (PBV52_26550) recR 5890805..5891404 (+) 600 WP_274241543.1 recombination mediator RecR Machinery gene
  PBV52_RS26555 (PBV52_26555) - 5891397..5892059 (+) 663 WP_274241544.1 DUF5063 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21808.20 Da        Isoelectric Point: 4.9909

>NTDB_id=719581 PBV52_RS26550 WP_274241543.1 5890805..5891404(+) (recR) [Streptomyces sp. T12]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=719581 PBV52_RS26550 WP_274241543.1 5890805..5891404(+) (recR) [Streptomyces sp. T12]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGACGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGCCTCGCCCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACGTGCGGGAACATCGCGCAGGAGGAGCTGTGCAACATCTGCCGGGACACGCGCCGTGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGCGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGGCCGGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCACGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452