Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PT012_RS10685 Genome accession   NZ_CP117820
Coordinates   2357756..2358418 (-) Length   220 a.a.
NCBI ID   WP_004084674.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352756..2363418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS10680 (PT012_10680) - 2353922..2357320 (+) 3399 WP_004084673.1 Rne/Rng family ribonuclease -
  PT012_RS10685 (PT012_10685) letA 2357756..2358418 (-) 663 WP_004084674.1 response regulator Regulator
  PT012_RS10690 (PT012_10690) - 2358668..2359441 (-) 774 WP_027700124.1 sulfurtransferase -
  PT012_RS10695 (PT012_10695) - 2360452..2360850 (+) 399 WP_012338114.1 response regulator -
  PT012_RS10700 (PT012_10700) - 2361905..2362516 (-) 612 WP_004084676.1 superoxide dismutase -
  PT012_RS10705 (PT012_10705) - 2362758..2363198 (+) 441 WP_004084677.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23879.00 Da        Isoelectric Point: 7.7703

>NTDB_id=719476 PT012_RS10685 WP_004084674.1 2357756..2358418(-) (letA) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MTIKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVI
IVSVLEDGPLPKRLLEAGASGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLSPRELEIALLL
IQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYGVSTPEKYSLDKRI

Nucleotide


Download         Length: 663 bp        

>NTDB_id=719476 PT012_RS10685 WP_004084674.1 2357756..2358418(-) (letA) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
ATGACTATTAAGATTTTTCTGATTGATGATCATACTCTCGTGCGTGTTGGCATGAAGATGATCTTATCCAATGAATTAGA
TCTCGAAGTGATAGGGGAAGCGGAGACAGGGGAGGCGGCTTTACCACAGATCCGTGAGCTACGCCCGAATGTCGTATTGT
GTGACATGCATCTCCCTGGGGTGAGTGGGCTGGAGATTACAGAAAAATTGGTGAAAGGGAATTATGGTAGCCGTGTAATT
ATTGTTTCGGTGTTGGAAGACGGCCCATTGCCGAAGCGACTGTTAGAGGCTGGAGCTTCTGGTTATGTTGGTAAGGGCGG
TGATGCTAATGAGTTGCTGCGTGCTATCCGTGAAGTAGCTTTAGGTAAGCGCTATCTTGGTAACAGCATTGCGCAGAATT
TGGTGTTGTCAAGCCTTGAAGGAGGATGTTCACCTTTTGATGTTTTGTCGCCGCGTGAGTTGGAAATTGCCTTGTTGTTA
ATCCAAGGTCTGAGTCAGGGGGCTATTGCTAAGCGGTTGTGTCTCAGTCCTAAGACAATCAACACTCATAAAGTGCGTTT
GTTCGCTAAAGTTGATGTTCGAGATACCATTGCTCTGGCTCGGTTGGCTATTCAGTACGGGGTGAGTACTCCGGAGAAAT
ATAGTTTAGATAAAAGGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

41.475

98.636

0.409
  letA Legionella pneumophila strain ERS1305867

41.475

98.636

0.409