Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NWE25_RS17880 Genome accession   NZ_CP102866
Coordinates   3656243..3657388 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651243..3662388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS17860 (NWE25_17860) - 3652140..3652568 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  NWE25_RS17865 (NWE25_17865) - 3652722..3653234 (+) 513 Protein_3469 bacteriocin biosynthesis protein AlbG -
  NWE25_RS17870 (NWE25_17870) - 3653241..3654617 (-) 1377 WP_046702210.1 YncE family protein -
  NWE25_RS17875 (NWE25_17875) - 3654657..3656012 (-) 1356 WP_038460212.1 YncE family protein -
  NWE25_RS17880 (NWE25_17880) rapF 3656243..3657388 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  NWE25_RS17885 (NWE25_17885) phrF 3657372..3657491 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NWE25_RS17890 (NWE25_17890) - 3657689..3657892 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  NWE25_RS17895 (NWE25_17895) - 3657906..3658109 (+) 204 WP_007407641.1 hypothetical protein -
  NWE25_RS17900 (NWE25_17900) - 3658144..3658328 (+) 185 Protein_3476 DUF4177 domain-containing protein -
  NWE25_RS17905 (NWE25_17905) - 3658515..3658796 (+) 282 WP_007407643.1 hypothetical protein -
  NWE25_RS17910 (NWE25_17910) - 3658840..3659352 (+) 513 WP_007614439.1 stage II sporulation protein M -
  NWE25_RS17915 (NWE25_17915) - 3659943..3660161 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  NWE25_RS17920 (NWE25_17920) speB 3660330..3661202 (-) 873 WP_007614448.1 agmatinase -
  NWE25_RS17925 (NWE25_17925) speE 3661261..3662091 (-) 831 WP_038464362.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=719455 NWE25_RS17880 WP_007407638.1 3656243..3657388(+) (rapF) [Bacillus velezensis strain YS-AT-DS1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=719455 NWE25_RS17880 WP_007407638.1 3656243..3657388(+) (rapF) [Bacillus velezensis strain YS-AT-DS1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGATTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564