Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL263_RS05980 Genome accession   NZ_AP018938
Coordinates   1132684..1133493 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain ATCC 49619     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127684..1138493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL263_RS05960 (SPAT_1125) - 1130026..1131012 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  EL263_RS05965 (SPAT_1126) - 1131275..1132048 (-) 774 WP_044811410.1 potassium channel family protein -
  EL263_RS05970 (SPAT_1127) - 1132095..1132349 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  EL263_RS05975 (SPAT_1128) relB 1132351..1132593 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EL263_RS05980 (SPAT_1129) vicX 1132684..1133493 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  EL263_RS05985 (SPAT_1130) micB 1133495..1134844 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL263_RS05990 (SPAT_1131) micA 1134837..1135541 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EL263_RS05995 (SPAT_1132) mutY 1135596..1136771 (-) 1176 WP_000886125.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=71941 EL263_RS05980 WP_001289493.1 1132684..1133493(-) (vicX) [Streptococcus pneumoniae strain ATCC 49619]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=71941 EL263_RS05980 WP_001289493.1 1132684..1133493(-) (vicX) [Streptococcus pneumoniae strain ATCC 49619]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment