Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NJN40_RS00125 Genome accession   NZ_CP102859
Coordinates   23736..24332 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain DM001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 18736..29332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJN40_RS00095 (NJN40_00095) - 18802..19197 (+) 396 WP_253612832.1 hypothetical protein -
  NJN40_RS00100 (NJN40_00100) - 19594..20187 (+) 594 WP_016387278.1 TMEM175 family protein -
  NJN40_RS00105 (NJN40_00105) - 20260..20454 (-) 195 WP_003568474.1 hypothetical protein -
  NJN40_RS00110 (NJN40_00110) cydB 20481..21500 (-) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  NJN40_RS00115 (NJN40_00115) - 21493..22971 (-) 1479 WP_253612834.1 cytochrome ubiquinol oxidase subunit I -
  NJN40_RS00120 (NJN40_00120) rpsR 23413..23649 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  NJN40_RS00125 (NJN40_00125) ssb 23736..24332 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  NJN40_RS00130 (NJN40_00130) rpsF 24363..24659 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  NJN40_RS00135 (NJN40_00135) ssb 24787..25218 (-) 432 WP_253612836.1 single-stranded DNA-binding protein -
  NJN40_RS00140 (NJN40_00140) deoC 25401..26105 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  NJN40_RS00145 (NJN40_00145) gyrA 26210..28831 (-) 2622 WP_253612838.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=719319 NJN40_RS00125 WP_003568462.1 23736..24332(-) (ssb) [Lacticaseibacillus paracasei strain DM001]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=719319 NJN40_RS00125 WP_003568462.1 23736..24332(-) (ssb) [Lacticaseibacillus paracasei strain DM001]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAATTATGGCGGCGGGCAGCAGTTTG
GTAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCAATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485