Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NWO26_RS05195 Genome accession   NZ_CP102797
Coordinates   1031272..1032306 (-) Length   344 a.a.
NCBI ID   WP_373867191.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1026272..1037306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS05170 ilvD 1026524..1028242 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  NWO26_RS05175 - 1028355..1029536 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  NWO26_RS05185 trmB 1029772..1030413 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NWO26_RS05190 ccrZ 1030423..1031214 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  NWO26_RS05195 pptB 1031272..1032306 (-) 1035 WP_373867191.1 ABC transporter permease Regulator
  NWO26_RS05200 pptA 1032306..1033037 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  NWO26_RS05205 - 1033102..1033521 (+) 420 WP_011681530.1 HIT family protein -
  NWO26_RS05210 - 1033518..1033817 (+) 300 WP_014621895.1 hypothetical protein -
  NWO26_RS05215 - 1033869..1034546 (-) 678 WP_011681532.1 hypothetical protein -
  NWO26_RS05220 - 1034616..1035251 (-) 636 WP_011681533.1 DUF4230 domain-containing protein -
  NWO26_RS05225 - 1035270..1035395 (-) 126 WP_011681534.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39922.42 Da        Isoelectric Point: 10.4910

>NTDB_id=719023 NWO26_RS05195 WP_373867191.1 1031272..1032306(-) (pptB) [Streptococcus thermophilus strain ST057-1]
MAELFKERSRRFTTRCAKYGRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=719023 NWO26_RS05195 WP_373867191.1 1031272..1032306(-) (pptB) [Streptococcus thermophilus strain ST057-1]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATGGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

99.128

100

0.991
  pptB Streptococcus salivarius strain HSISS4

92.442

100

0.924