Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NWO26_RS03085 Genome accession   NZ_CP102797
Coordinates   605957..606838 (-) Length   293 a.a.
NCBI ID   WP_011681210.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 600957..611838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS03060 vicR 601661..602368 (-) 708 WP_011681206.1 response regulator YycF Regulator
  NWO26_RS03065 - 602895..603662 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  NWO26_RS03070 - 603674..604507 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  NWO26_RS03075 - 604525..605223 (+) 699 WP_014608374.1 amino acid ABC transporter permease -
  NWO26_RS03080 - 605235..605885 (+) 651 WP_014608375.1 amino acid ABC transporter permease -
  NWO26_RS03085 endA 605957..606838 (-) 882 WP_011681210.1 DNA/RNA non-specific endonuclease Machinery gene
  NWO26_RS03090 - 606900..607088 (-) 189 WP_011226090.1 DNA-directed RNA polymerase subunit beta -
  NWO26_RS03095 murA 607090..608361 (-) 1272 WP_024704149.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NWO26_RS03100 - 608431..608667 (-) 237 WP_002946959.1 DUF1146 family protein -
  NWO26_RS03105 galE 608856..609869 (-) 1014 WP_113870341.1 UDP-glucose 4-epimerase GalE -
  NWO26_RS03110 - 609884..610318 (-) 435 WP_231107205.1 DUF4832 domain-containing protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 31773.50 Da        Isoelectric Point: 10.1789

>NTDB_id=719012 NWO26_RS03085 WP_011681210.1 605957..606838(-) (endA) [Streptococcus thermophilus strain ST057-1]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide


Download         Length: 882 bp        

>NTDB_id=719012 NWO26_RS03085 WP_011681210.1 605957..606838(-) (endA) [Streptococcus thermophilus strain ST057-1]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGCCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTGGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTAAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(101-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72.803

81.57

0.594
  endA Streptococcus pneumoniae D39

72.803

81.57

0.594
  endA Streptococcus pneumoniae R6

72.803

81.57

0.594
  endA Streptococcus pneumoniae TIGR4

72.803

81.57

0.594