Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PTC92_RS01580 Genome accession   NZ_CP117759
Coordinates   338018..338491 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00843     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333018..343491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC92_RS01555 (PTC92_01555) - 333482..335587 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  PTC92_RS01560 (PTC92_01560) - 335627..335756 (-) 130 Protein_297 hypothetical protein -
  PTC92_RS01565 (PTC92_01565) rpoZ 335795..336073 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PTC92_RS01570 (PTC92_01570) gmk 336146..336775 (-) 630 WP_000015937.1 guanylate kinase -
  PTC92_RS01575 (PTC92_01575) ispH 336898..337848 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PTC92_RS01580 (PTC92_01580) fimU 338018..338491 (+) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  PTC92_RS01585 (PTC92_01585) pilV 338485..339045 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  PTC92_RS01590 (PTC92_01590) pilW 339046..340047 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  PTC92_RS01595 (PTC92_01595) pilX 340044..340862 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=719005 PTC92_RS01580 WP_001214061.1 338018..338491(+) (fimU) [Acinetobacter baumannii strain 2022CK-00843]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=719005 PTC92_RS01580 WP_001214061.1 338018..338491(+) (fimU) [Acinetobacter baumannii strain 2022CK-00843]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987