Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NU955_RS16495 Genome accession   NZ_CP102762
Coordinates   3471927..3472454 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3466927..3477454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS16475 - 3467116..3467991 (-) 876 WP_000218801.1 hypothetical protein -
  NU955_RS16480 aroB 3468007..3469089 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  NU955_RS16485 aroK 3469118..3469687 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NU955_RS16490 pilQ 3469699..3471864 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  NU955_RS16495 pilP 3471927..3472454 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NU955_RS16500 pilO 3472465..3473205 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  NU955_RS16505 pilN 3473202..3473843 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  NU955_RS16510 pilM 3473843..3474901 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=718871 NU955_RS16495 WP_000695065.1 3471927..3472454(-) (pilP) [Acinetobacter baumannii strain AOR07-BL]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=718871 NU955_RS16495 WP_000695065.1 3471927..3472454(-) (pilP) [Acinetobacter baumannii strain AOR07-BL]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTAGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTAATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714