Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NU955_RS16510 Genome accession   NZ_CP102762
Coordinates   3473843..3474901 (-) Length   352 a.a.
NCBI ID   WP_002014066.1    Uniprot ID   N9LI98
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468843..3479901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS16485 aroK 3469118..3469687 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NU955_RS16490 pilQ 3469699..3471864 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  NU955_RS16495 pilP 3471927..3472454 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NU955_RS16500 pilO 3472465..3473205 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  NU955_RS16505 pilN 3473202..3473843 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  NU955_RS16510 pilM 3473843..3474901 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NU955_RS16515 ponA 3475065..3477620 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  NU955_RS16520 - 3477638..3478462 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  NU955_RS16525 - 3478465..3478797 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39032.59 Da        Isoelectric Point: 4.4618

>NTDB_id=718874 NU955_RS16510 WP_002014066.1 3473843..3474901(-) (pilM) [Acinetobacter baumannii strain AOR07-BL]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=718874 NU955_RS16510 WP_002014066.1 3473843..3474901(-) (pilM) [Acinetobacter baumannii strain AOR07-BL]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGTCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCAAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCTAAGCTTTTGCAGCAAAAATTGGGCTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LI98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

100

100

1
  comM Acinetobacter nosocomialis M2

99.148

100

0.991
  comM Acinetobacter baylyi ADP1

81.534

100

0.815
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423