Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL271_RS09170 Genome accession   NZ_AP018937
Coordinates   1694899..1695825 (-) Length   308 a.a.
NCBI ID   WP_000103701.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689899..1700825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS09145 (SPOH_1697) treR 1690620..1691330 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EL271_RS09155 - 1691485..1692811 (+) 1327 Protein_1714 transposase -
  EL271_RS09160 (SPOH_1701) amiF 1692886..1693812 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  EL271_RS09165 (SPOH_1702) amiE 1693823..1694890 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EL271_RS09170 (SPOH_1703) amiD 1694899..1695825 (-) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator
  EL271_RS09175 (SPOH_1704) amiC 1695825..1697321 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  EL271_RS09180 (SPOH_1705) amiA3 1697388..1699367 (-) 1980 WP_000742230.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34662.82 Da        Isoelectric Point: 9.7939

>NTDB_id=71884 EL271_RS09170 WP_000103701.1 1694899..1695825(-) (amiD) [Streptococcus pneumoniae strain HU-OH]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVVKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=71884 EL271_RS09170 WP_000103701.1 1694899..1695825(-) (amiD) [Streptococcus pneumoniae strain HU-OH]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGTCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment