Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NWE22_RS05750 Genome accession   NZ_CP102747
Coordinates   1127194..1128420 (-) Length   408 a.a.
NCBI ID   WP_171989798.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122194..1133420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS05720 (NWE22_05720) - 1122465..1122671 (-) 207 WP_216806785.1 excalibur calcium-binding domain-containing protein -
  NWE22_RS05725 (NWE22_05725) - 1122690..1123715 (-) 1026 WP_239603926.1 calcium-binding protein -
  NWE22_RS05730 (NWE22_05730) - 1123949..1124131 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  NWE22_RS05735 (NWE22_05735) lepA 1124181..1126013 (-) 1833 WP_239603927.1 translation elongation factor 4 -
  NWE22_RS05740 (NWE22_05740) ndk 1126111..1126524 (-) 414 WP_239603928.1 nucleoside-diphosphate kinase -
  NWE22_RS05745 (NWE22_05745) yihA 1126546..1127133 (-) 588 WP_239603929.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NWE22_RS05750 (NWE22_05750) clpX 1127194..1128420 (-) 1227 WP_171989798.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NWE22_RS05755 (NWE22_05755) - 1128618..1129130 (-) 513 WP_277745234.1 dihydrofolate reductase -
  NWE22_RS05760 (NWE22_05760) - 1129341..1130180 (-) 840 WP_174845977.1 thymidylate synthase -
  NWE22_RS05765 (NWE22_05765) - 1130233..1130535 (-) 303 WP_277745235.1 hypothetical protein -
  NWE22_RS05770 (NWE22_05770) - 1130548..1130826 (-) 279 WP_239603932.1 hypothetical protein -
  NWE22_RS05775 (NWE22_05775) - 1130951..1131910 (-) 960 WP_174845980.1 ROK family glucokinase -
  NWE22_RS05780 (NWE22_05780) - 1132072..1132407 (-) 336 WP_171989804.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=718697 NWE22_RS05750 WP_171989798.1 1127194..1128420(-) (clpX) [Streptococcus parasuis strain SFJ45]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIIKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=718697 NWE22_RS05750 WP_171989798.1 1127194..1128420(-) (clpX) [Streptococcus parasuis strain SFJ45]
ATGGCTGTCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGATGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTATTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGACCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGGCTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.863

100

0.841
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569