Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHB23_RS13630 Genome accession   NZ_CP102716
Coordinates   2935861..2936451 (-) Length   196 a.a.
NCBI ID   WP_005690377.1    Uniprot ID   A0A508YN23
Organism   Lacticaseibacillus rhamnosus strain DM065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2930861..2941451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB23_RS13600 (NHB23_013600) - 2931195..2931620 (+) 426 WP_005690370.1 hypothetical protein -
  NHB23_RS13605 (NHB23_013605) - 2931699..2931893 (-) 195 WP_005685667.1 hypothetical protein -
  NHB23_RS13610 (NHB23_013610) cydB 2931933..2932952 (-) 1020 WP_005690372.1 cytochrome d ubiquinol oxidase subunit II -
  NHB23_RS13615 (NHB23_013615) - 2932945..2934423 (-) 1479 WP_005690374.1 cytochrome ubiquinol oxidase subunit I -
  NHB23_RS13620 (NHB23_013620) - 2934734..2935240 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  NHB23_RS13625 (NHB23_013625) rpsR 2935533..2935769 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  NHB23_RS13630 (NHB23_013630) ssb 2935861..2936451 (-) 591 WP_005690377.1 single-stranded DNA-binding protein Machinery gene
  NHB23_RS13635 (NHB23_013635) rpsF 2936481..2936777 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  NHB23_RS13640 (NHB23_013640) ssb 2936904..2937335 (-) 432 WP_005690380.1 single-stranded DNA-binding protein -
  NHB23_RS13645 (NHB23_013645) - 2937445..2937531 (+) 87 Protein_2654 deoxyribose-phosphate aldolase -
  NHB23_RS13650 (NHB23_013650) - 2937659..2938171 (-) 513 WP_012807317.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  NHB23_RS13655 (NHB23_013655) - 2938266..2938496 (-) 231 WP_005690384.1 hypothetical protein -
  NHB23_RS13660 (NHB23_013660) - 2938873..2938971 (-) 99 Protein_2657 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20905.63 Da        Isoelectric Point: 4.9056

>NTDB_id=718549 NHB23_RS13630 WP_005690377.1 2935861..2936451(-) (ssb) [Lacticaseibacillus rhamnosus strain DM065]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=718549 NHB23_RS13630 WP_005690377.1 2935861..2936451(-) (ssb) [Lacticaseibacillus rhamnosus strain DM065]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YN23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.735

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5