Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSQ21_RS18955 Genome accession   NZ_CP117709
Coordinates   4311953..4312552 (+) Length   199 a.a.
NCBI ID   WP_274031767.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4306953..4317552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS18930 - 4307099..4308481 (+) 1383 WP_274031761.1 aspartate aminotransferase family protein -
  PSQ21_RS18935 - 4308675..4309403 (+) 729 WP_274031763.1 GntR family transcriptional regulator -
  PSQ21_RS18940 - 4309464..4310114 (+) 651 WP_274031764.1 hypothetical protein -
  PSQ21_RS18945 - 4310292..4311089 (-) 798 WP_274031765.1 SLATT domain-containing protein -
  PSQ21_RS18950 - 4311456..4311800 (+) 345 WP_097868468.1 YbaB/EbfC family nucleoid-associated protein -
  PSQ21_RS18955 recR 4311953..4312552 (+) 600 WP_274031767.1 recombination mediator RecR Machinery gene
  PSQ21_RS18960 - 4312708..4313367 (+) 660 WP_274031768.1 DUF5063 domain-containing protein -
  PSQ21_RS18965 - 4313458..4314300 (-) 843 WP_274031769.1 NAD(P)H-binding protein -
  PSQ21_RS18970 - 4314434..4314682 (+) 249 WP_274031770.1 hypothetical protein -
  PSQ21_RS18975 - 4315022..4315276 (+) 255 WP_274031771.1 hypothetical protein -
  PSQ21_RS18980 - 4315318..4316013 (+) 696 WP_274031772.1 hypothetical protein -
  PSQ21_RS18985 - 4316064..4316642 (+) 579 WP_274031774.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21887.16 Da        Isoelectric Point: 5.1721

>NTDB_id=718545 PSQ21_RS18955 WP_274031767.1 4311953..4312552(+) (recR) [Streptomyces sp. MMBL 11-1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCEVCGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=718545 PSQ21_RS18955 WP_274031767.1 4311953..4312552(+) (recR) [Streptomyces sp. MMBL 11-1]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTGCTGCAGGCCGAGCCCACCGACGTACGCCGGCTCGCGCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGAGGTGTGCGGCAATGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGGGACGCGCGCCGCGACCGGAGCGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGGGCGATCAGTCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTGGCGCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACCGACCCCAATCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTCAGAGTGACCCGGCTGGCCAGCGGTCTGCCGGTCGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGAAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447