Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PSQ21_RS13915 Genome accession   NZ_CP117709
Coordinates   3237523..3238935 (+) Length   470 a.a.
NCBI ID   WP_274030822.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3232523..3243935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS13900 - 3233475..3234425 (-) 951 WP_274030819.1 Ppx/GppA phosphatase family protein -
  PSQ21_RS13905 - 3234510..3235367 (+) 858 WP_274030820.1 hypothetical protein -
  PSQ21_RS13910 - 3235439..3237313 (-) 1875 WP_274030821.1 hypothetical protein -
  PSQ21_RS13915 radA/sms 3237523..3238935 (+) 1413 WP_274030822.1 DNA repair protein RadA Machinery gene
  PSQ21_RS13920 disA 3239015..3240139 (+) 1125 WP_007456913.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  PSQ21_RS13925 - 3240435..3241175 (-) 741 WP_274035761.1 hypothetical protein -
  PSQ21_RS13930 - 3241488..3242393 (+) 906 WP_032793704.1 A/G-specific adenine glycosylase -
  PSQ21_RS13935 - 3242640..3243311 (+) 672 WP_274030823.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49495.61 Da        Isoelectric Point: 8.0042

>NTDB_id=718529 PSQ21_RS13915 WP_274030822.1 3237523..3238935(+) (radA/sms) [Streptomyces sp. MMBL 11-1]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LAHLDEVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=718529 PSQ21_RS13915 WP_274030822.1 3237523..3238935(+) (radA/sms) [Streptomyces sp. MMBL 11-1]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGTACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGTCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACGGCGGCGG
GCCGGGTATCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACGGCCCGCTCCACCGGTGTCGGCGAG
CTGGACCGGGTGCTGGGCGGGGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGGGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGGTCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCACGTCACGAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGGCTGCGTCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGACTCTTCCTGACCCGCCGCGACGTGGCCGTGC
CGGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGACCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCTGACC
TGGCGATCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGGAGGGTCACCGGGGTGCAGCGCAGACTGGCCGAGGCACACCGTCTGGGCTTCACCCACGCACT
CGTTCCGACCGACCCGGGGAGAGTCCCGGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAGGAGGCACCACAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus pneumoniae Rx1

44.289

91.277

0.404
  radA Streptococcus pneumoniae D39

44.289

91.277

0.404
  radA Streptococcus pneumoniae R6

44.289

91.277

0.404
  radA Streptococcus pneumoniae TIGR4

44.289

91.277

0.404
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402