Detailed information NTG0718489

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PSR34_RS22460
• Genome accession: NZ_CP117672
• Coordinates: 4607468..4608493 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain KW21
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4602468..4613493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSR34_RS22435 (PSR34_22435)	metJ	4603029..4603346 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
PSR34_RS22440 (PSR34_22440)	yiiX	4603406..4604014 (+)	609	WP_001402675.1	YiiX family permuted papain-like enzyme	-
PSR34_RS22445 (PSR34_22445)	-	4604021..4604644 (+)	624	WP_001402674.1	TIGR02117 family protein	-
PSR34_RS22450 (PSR34_22450)	rpmE	4604699..4604911 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
PSR34_RS22455 (PSR34_22455)	priA	4605114..4607312 (+)	2199	WP_001298972.1	primosomal protein N'	Machinery gene
PSR34_RS22460 (PSR34_22460)	cytR	4607468..4608493 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
PSR34_RS22465 (PSR34_22465)	ftsN	4608585..4609544 (+)	960	WP_000068834.1	cell division protein FtsN	-
PSR34_RS22470 (PSR34_22470)	hslV	4609637..4610167 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
PSR34_RS22475 (PSR34_22475)	hslU	4610177..4611508 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
PSR34_RS22480 (PSR34_22480)	menA	4611575..4612501 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PSR34_RS22485 (PSR34_22485)	rraA	4612594..4613079 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
PSR34_RS22490 (PSR34_22490)	zapB	4613164..4613409 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=718489 PSR34_RS22460 WP_000644904.1 4607468..4608493(+) (cytR) [Escherichia coli strain KW21]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=718489 PSR34_RS22460 WP_000644904.1 4607468..4608493(+) (cytR) [Escherichia coli strain KW21]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628