Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NIM79_RS00485 | Genome accession | NZ_CP102712 |
| Coordinates | 99710..100300 (+) | Length | 196 a.a. |
| NCBI ID | WP_005709832.1 | Uniprot ID | A0A0J6XXP0 |
| Organism | Lacticaseibacillus rhamnosus strain DM054 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 97190..114647 | 99710..100300 | within | 0 |
Gene organization within MGE regions
Location: 97190..114647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIM79_RS00455 (NIM79_000455) | - | 97190..97288 (+) | 99 | Protein_89 | single-stranded DNA-binding protein | - |
| NIM79_RS00460 (NIM79_000460) | - | 97668..97895 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| NIM79_RS00465 (NIM79_000465) | - | 97990..98502 (+) | 513 | WP_223804855.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| NIM79_RS00470 (NIM79_000470) | - | 98630..98716 (-) | 87 | Protein_92 | deoxyribose-phosphate aldolase | - |
| NIM79_RS00475 (NIM79_000475) | ssb | 98826..99257 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| NIM79_RS00480 (NIM79_000480) | rpsF | 99384..99680 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| NIM79_RS00485 (NIM79_000485) | ssb | 99710..100300 (+) | 591 | WP_005709832.1 | single-stranded DNA-binding protein | Machinery gene |
| NIM79_RS00490 (NIM79_000490) | rpsR | 100392..100628 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| NIM79_RS00495 (NIM79_000495) | - | 101022..101528 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| NIM79_RS00500 (NIM79_000500) | - | 101839..103317 (+) | 1479 | WP_014568874.1 | cytochrome ubiquinol oxidase subunit I | - |
| NIM79_RS00505 (NIM79_000505) | cydB | 103310..104329 (+) | 1020 | WP_014568875.1 | cytochrome d ubiquinol oxidase subunit II | - |
| NIM79_RS00510 (NIM79_000510) | - | 104369..104563 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| NIM79_RS00515 (NIM79_000515) | - | 105055..106071 (+) | 1017 | WP_014568877.1 | IS30 family transposase | - |
| NIM79_RS00520 (NIM79_000520) | - | 107107..107784 (+) | 678 | WP_014568879.1 | CPBP family intramembrane glutamic endopeptidase | - |
| NIM79_RS00525 (NIM79_000525) | - | 108328..109743 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| NIM79_RS00530 (NIM79_000530) | - | 109940..110632 (+) | 693 | WP_014568882.1 | CPBP family intramembrane glutamic endopeptidase | - |
| NIM79_RS00535 (NIM79_000535) | - | 110991..111254 (+) | 264 | WP_014568883.1 | hypothetical protein | - |
| NIM79_RS00540 (NIM79_000540) | - | 111395..111919 (-) | 525 | WP_014568884.1 | ABC transporter permease | - |
| NIM79_RS00545 (NIM79_000545) | - | 112106..113524 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| NIM79_RS00550 (NIM79_000550) | - | 113739..114647 (-) | 909 | WP_014568886.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20932.66 Da Isoelectric Point: 4.9056
>NTDB_id=718470 NIM79_RS00485 WP_005709832.1 99710..100300(+) (ssb) [Lacticaseibacillus rhamnosus strain DM054]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=718470 NIM79_RS00485 WP_005709832.1 99710..100300(+) (ssb) [Lacticaseibacillus rhamnosus strain DM054]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.204 |
100 |
0.602 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.749 |
100 |
0.505 |