Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PSR34_RS09130 Genome accession   NZ_CP117672
Coordinates   1912176..1912832 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain KW21     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907176..1917832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR34_RS09100 (PSR34_09100) dcyD 1908056..1909042 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  PSR34_RS09105 (PSR34_09105) tcyL 1909057..1909725 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  PSR34_RS09110 (PSR34_09110) tcyN 1909722..1910474 (+) 753 WP_001272986.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PSR34_RS09115 (PSR34_09115) sdiA 1910704..1911426 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  PSR34_RS09120 (PSR34_09120) yecF 1911493..1911717 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  PSR34_RS09125 (PSR34_09125) yecU 1911704..1911880 (-) 177 WP_000590347.1 protein YecU -
  PSR34_RS24875 - 1911963..1912034 (-) 72 Protein_1782 transcriptional regulator -
  PSR34_RS09130 (PSR34_09130) letA 1912176..1912832 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PSR34_RS09135 (PSR34_09135) uvrC 1912829..1914661 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  PSR34_RS09140 (PSR34_09140) pgsA 1914718..1915266 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR34_RS09160 (PSR34_09160) yecA 1915916..1916581 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=718457 PSR34_RS09130 WP_000611335.1 1912176..1912832(+) (letA) [Escherichia coli strain KW21]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=718457 PSR34_RS09130 WP_000611335.1 1912176..1912832(+) (letA) [Escherichia coli strain KW21]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486