Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PSR34_RS05750 Genome accession   NZ_CP117672
Coordinates   1184628..1185365 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain KW21     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179628..1190365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR34_RS05720 (PSR34_05720) yfiL 1179786..1180151 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  PSR34_RS05725 (PSR34_05725) aroF 1180361..1181431 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PSR34_RS05730 (PSR34_05730) tyrA 1181442..1182563 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PSR34_RS05735 (PSR34_05735) pheA 1182606..1183766 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  PSR34_RS05740 (PSR34_05740) pheL 1183865..1183912 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PSR34_RS05745 (PSR34_05745) raiA 1184016..1184357 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PSR34_RS05750 (PSR34_05750) comL 1184628..1185365 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PSR34_RS05755 (PSR34_05755) rluD 1185500..1186480 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSR34_RS05760 (PSR34_05760) yfiH 1186477..1187208 (+) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  PSR34_RS05765 (PSR34_05765) clpC 1187338..1189911 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=718445 PSR34_RS05750 WP_000197686.1 1184628..1185365(-) (comL) [Escherichia coli strain KW21]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=718445 PSR34_RS05750 WP_000197686.1 1184628..1185365(-) (comL) [Escherichia coli strain KW21]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376