Detailed information NTG0718440

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NV951_RS21115
• Genome accession: NZ_CP102692
• Coordinates: 4289140..4289940 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain GN4542
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4284140..4294940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NV951_RS21080 (NV951_21075)	gspH	4284296..4284811 (+)	516	WP_049109823.1	type II secretion system minor pseudopilin GspH	-
NV951_RS21085 (NV951_21080)	gspI	4284808..4285173 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NV951_RS21090 (NV951_21085)	gspJ	4285170..4285766 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
NV951_RS21095 (NV951_21090)	gspK	4285763..4286749 (+)	987	WP_077258802.1	type II secretion system minor pseudopilin GspK	-
NV951_RS21100 (NV951_21095)	gspL	4286736..4287929 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
NV951_RS21105 (NV951_21100)	-	4287922..4288407 (+)	486	WP_004151943.1	type II secretion system protein M	-
NV951_RS21110 (NV951_21105)	-	4288397..4289143 (+)	747	WP_004145897.1	type II secretion system protein N	-
NV951_RS21115 (NV951_21110)	pilD	4289140..4289940 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NV951_RS21120 (NV951_21115)	hrpB	4289988..4292417 (-)	2430	WP_049109826.1	ATP-dependent helicase HrpB	-
NV951_RS21125 (NV951_21120)	thpR	4292490..4293026 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NV951_RS21130 (NV951_21125)	sfsA	4293026..4293742 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NV951_RS21135 (NV951_21130)	dksA	4293905..4294360 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=718440 NV951_RS21115 WP_004145898.1 4289140..4289940(+) (pilD) [Klebsiella pneumoniae strain GN4542]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=718440 NV951_RS21115 WP_004145898.1 4289140..4289940(+) (pilD) [Klebsiella pneumoniae strain GN4542]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGAGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425