Detailed information NTG0718405

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NV950_RS12720
• Genome accession: NZ_CP102687
• Coordinates: 2563700..2564500 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain GN4539
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2558700..2569500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NV950_RS12685 (NV950_12680)	gspH	2558856..2559371 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
NV950_RS12690 (NV950_12685)	gspI	2559368..2559733 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NV950_RS12695 (NV950_12690)	gspJ	2559730..2560326 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
NV950_RS12700 (NV950_12695)	gspK	2560323..2561309 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
NV950_RS12705 (NV950_12700)	gspL	2561296..2562489 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
NV950_RS12710 (NV950_12705)	-	2562482..2562967 (+)	486	WP_004151943.1	type II secretion system protein M	-
NV950_RS12715 (NV950_12710)	-	2562957..2563703 (+)	747	WP_004145897.1	type II secretion system protein N	-
NV950_RS12720 (NV950_12715)	pilD	2563700..2564500 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
NV950_RS12725 (NV950_12720)	hrpB	2564548..2566977 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
NV950_RS12730 (NV950_12725)	thpR	2567050..2567586 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
NV950_RS12735 (NV950_12730)	sfsA	2567586..2568302 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NV950_RS12740 (NV950_12735)	dksA	2568465..2568920 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=718405 NV950_RS12720 WP_002888947.1 2563700..2564500(+) (pilD) [Klebsiella pneumoniae strain GN4539]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=718405 NV950_RS12720 WP_002888947.1 2563700..2564500(+) (pilD) [Klebsiella pneumoniae strain GN4539]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425