Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PS271_RS15835 Genome accession   NZ_CP117521
Coordinates   3509967..3511418 (-) Length   483 a.a.
NCBI ID   WP_398382497.1    Uniprot ID   -
Organism   Streptomyces sp. SCA2-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3504967..3516418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS15810 (PS271_15770) - 3505403..3506086 (+) 684 WP_398382493.1 response regulator -
  PS271_RS15815 (PS271_15775) - 3506427..3506915 (+) 489 WP_398382494.1 pyridoxamine 5'-phosphate oxidase -
  PS271_RS15820 (PS271_15780) - 3506947..3507537 (-) 591 WP_398382495.1 phosphatase PAP2 family protein -
  PS271_RS15825 (PS271_15785) - 3507722..3508543 (+) 822 WP_398382496.1 hypothetical protein -
  PS271_RS15830 (PS271_15790) disA 3508720..3509844 (-) 1125 WP_356289684.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  PS271_RS15835 (PS271_15795) radA/sms 3509967..3511418 (-) 1452 WP_398382497.1 DNA repair protein RadA Machinery gene
  PS271_RS15840 (PS271_15800) - 3511773..3513389 (+) 1617 WP_398382498.1 sigma-70 family RNA polymerase sigma factor -
  PS271_RS15845 (PS271_15805) - 3513684..3514493 (-) 810 WP_398382499.1 hypothetical protein -
  PS271_RS15850 (PS271_15810) - 3514539..3515480 (+) 942 WP_398382500.1 Ppx/GppA family phosphatase -
  PS271_RS15855 (PS271_15815) - 3515578..3516402 (+) 825 WP_398382501.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 50543.81 Da        Isoelectric Point: 7.7066

>NTDB_id=718284 PS271_RS15835 WP_398382497.1 3509967..3511418(-) (radA/sms) [Streptomyces sp. SCA2-17]
MAARTARPSAKDRPSYRCTECGWTTVKWLGRCPECQAWGTVEEFGAPAVRTTAPGRVSTAALPIGQVDGRQATARSTGVD
ELDRVLGGGLVPGAVVLIAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAA
VLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAARLGFTHALVPGDPGKVPSGMRVLEVADIGEALRVLPKRVPRENRRRAGSDAPAGESPVGP
VQA

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=718284 PS271_RS15835 WP_398382497.1 3509967..3511418(-) (radA/sms) [Streptomyces sp. SCA2-17]
ATGGCTGCCCGTACCGCACGCCCGTCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAGTGCGGCTGGACCACGGTCAA
GTGGCTCGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGCGCCCGCGGTGCGGACGACCGCGC
CCGGCCGCGTGTCCACCGCCGCGCTGCCCATCGGCCAGGTTGACGGCCGGCAGGCCACCGCGCGCAGCACGGGAGTGGAC
GAGCTGGACCGCGTCCTGGGCGGCGGGCTCGTGCCGGGGGCGGTGGTGCTGATCGCGGGCGAGCCGGGCGTCGGCAAGTC
GACGCTCCTGCTGGACGTGGCGGCGAAGGCCGCCTCCGAGGAGCACCGCACGCTGTATGTGACGGGTGAGGAGTCAGCGA
GCCAGGTGCGCCTGCGGGCGGACCGCATCGGGGCGATCGACGACCACTTGTATCTGGCGGCCGAGACGGATCTGGCGGCC
GTGCTCGGGCACCTCGACTCCGTCAAGCCGTCCCTGCTGGTCCTGGACTCGGTGCAGACGGTGGCCTCGCCGGAGATCGA
CGGCGCGCCGGGCGGCATGGCGCAGGTGCGCGAGGTGGCGGGCGCCCTGATCCGGGCCTCCAAGGAGCGGGGCATGGCCA
CGCTCCTGGTCGGTCACGTCACCAAGGACGGGGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGCCTGCGGCTGGTGCGCGGCGTGAAGAACCGCTACGGGGCGACGGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCACCGGTCTGGCCGATCCGAGCGGCCTGTTCCTCACCCGCCGCGCCGAGCCCG
TCCCGGGCACGTGTCTGACGGTGACGCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTGACGGTCGATTCG
CAGATCCCCTCGCCGCGCCGCACGACGTCCGGCCTGGAGACGTCGCGGGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
GGGCAGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTGTCGGAGCCCGCGGCGG
ACCTGGCGGTCGCCCTGGCCCTGGCCAGTGCCGCCAGCGACACCCCCCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTG
GGCCTGGCCGGCGAGGTCCGGCGGGTCACCGGAGTGCAGCGGCGGCTGGCGGAGGCGGCCCGGCTGGGCTTCACGCACGC
GCTGGTGCCGGGCGATCCGGGGAAGGTGCCGAGCGGCATGCGCGTCCTCGAAGTCGCGGACATAGGCGAGGCGCTTCGAG
TGCTCCCCAAGCGGGTACCCCGGGAGAACCGGCGCCGAGCCGGGTCGGACGCCCCGGCCGGGGAGAGCCCTGTCGGCCCT
GTTCAAGCGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.812

93.789

0.42
  radA Streptococcus mitis SK321

44.69

93.582

0.418
  radA Streptococcus mitis NCTC 12261

44.69

93.582

0.418
  radA Streptococcus pneumoniae Rx1

44.469

93.582

0.416
  radA Streptococcus pneumoniae TIGR4

44.469

93.582

0.416
  radA Streptococcus pneumoniae D39

44.469

93.582

0.416
  radA Streptococcus pneumoniae R6

44.469

93.582

0.416