Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PS271_RS14995 Genome accession   NZ_CP117521
Coordinates   3337108..3337707 (+) Length   199 a.a.
NCBI ID   WP_030367243.1    Uniprot ID   A0A3B0BRB8
Organism   Streptomyces sp. SCA2-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3332108..3342707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS14965 (PS271_14925) - 3332171..3333013 (-) 843 WP_398382372.1 NAD(P)H-binding protein -
  PS271_RS14970 (PS271_14930) - 3333127..3333663 (+) 537 WP_398382373.1 MarR family winged helix-turn-helix transcriptional regulator -
  PS271_RS14985 (PS271_14945) - 3334145..3336460 (+) 2316 WP_398382374.1 DNA polymerase III subunit gamma and tau -
  PS271_RS14990 (PS271_14950) - 3336663..3337007 (+) 345 WP_120755273.1 YbaB/EbfC family nucleoid-associated protein -
  PS271_RS14995 (PS271_14955) recR 3337108..3337707 (+) 600 WP_030367243.1 recombination mediator RecR Machinery gene
  PS271_RS15000 (PS271_14960) - 3337700..3338356 (+) 657 WP_359107874.1 DUF5063 domain-containing protein -
  PS271_RS15005 (PS271_14965) - 3338623..3339666 (+) 1044 WP_398382375.1 methyltransferase -
  PS271_RS15010 (PS271_14970) - 3339920..3341191 (+) 1272 WP_356289233.1 aspartate kinase -
  PS271_RS15015 (PS271_14975) - 3341188..3342294 (+) 1107 WP_398382376.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21756.07 Da        Isoelectric Point: 5.4123

>NTDB_id=718278 PS271_RS14995 WP_030367243.1 3337108..3337707(+) (recR) [Streptomyces sp. SCA2-17]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKAKVRFCAVCGNVAQEERCRVCQDPRRDPAV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=718278 PS271_RS14995 WP_030367243.1 3337108..3337707(+) (recR) [Streptomyces sp. SCA2-17]
GTGTATGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGGCCGACGTCCGCCGGCTCGCCCACGCCCTGACCGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGGTCTGCGGCAATGTCGCCCAGGAGGAGCGGTGCCGGGTCTGCCAGGACCCGCGCCGCGACCCCGCCGTG
ATCTGCGTCGTGGAGGAGTCCAAGGACGTCGTCGCCATCGAGCGGACGAGGGAATTCCGCGGCCGCTACCACGTCCTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGATCTGCGCATCCGCGAGCTGCTCGCCCGGCTCGCGGACGGCA
CCGTCACCGAGCTGATTCTCGCCACCGACCCCAATCTGGAAGGTGAGGCCACCGCCACGTACCTCGCCCGTATGGTGAAG
CCCATGGGGCTCAAGGTCACGCGGCTGGCCAGCGGCCTTCCCGTAGGGGGAGACCTTGAATACGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAAGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B0BRB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457