Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PSH70_RS25800 Genome accession   NZ_CP117438
Coordinates   5673866..5674495 (-) Length   209 a.a.
NCBI ID   WP_053258309.1    Uniprot ID   A0ABY1T8N6
Organism   Pseudomonas fluorescens strain FP2327     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5668866..5679495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS25780 (PSH70_25775) - 5669188..5670012 (-) 825 WP_017739612.1 ABC transporter permease -
  PSH70_RS25785 (PSH70_25780) - 5670025..5671257 (-) 1233 WP_053258306.1 ABC transporter permease -
  PSH70_RS25790 (PSH70_25785) - 5671455..5672495 (-) 1041 WP_053258307.1 ABC transporter substrate-binding protein -
  PSH70_RS25795 (PSH70_25790) - 5672539..5673651 (-) 1113 WP_053258308.1 ABC transporter ATP-binding protein -
  PSH70_RS25800 (PSH70_25795) letA 5673866..5674495 (-) 630 WP_053258309.1 response regulator transcription factor Regulator
  PSH70_RS25805 (PSH70_25800) - 5674514..5676508 (-) 1995 WP_053258310.1 transporter substrate-binding domain-containing protein -
  PSH70_RS25810 (PSH70_25805) - 5676586..5677554 (+) 969 WP_305439058.1 alpha/beta hydrolase family protein -
  PSH70_RS25815 (PSH70_25810) - 5677713..5678480 (-) 768 WP_201230262.1 TerB family tellurite resistance protein -
  PSH70_RS25820 (PSH70_25815) murU 5678482..5679159 (-) 678 WP_053258313.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22691.45 Da        Isoelectric Point: 6.7600

>NTDB_id=718147 PSH70_RS25800 WP_053258309.1 5673866..5674495(-) (letA) [Pseudomonas fluorescens strain FP2327]
MIRVLVAEDHTIVREGIKQLIGLAKDLQVVGEASNGEQLLETLRHVACEVVLLDISMPGVNGLEAIARIRALNNPPAILV
LSMHDEAQMAARALKVGAAGYATKDSDPALLLTAIRKVAAGGRYIDPDLADRMVFEVGLTDARPLHSLLSEREFSVFERL
AQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=718147 PSH70_RS25800 WP_053258309.1 5673866..5674495(-) (letA) [Pseudomonas fluorescens strain FP2327]
GTGATTCGTGTATTGGTAGCCGAAGACCACACCATCGTCCGTGAAGGCATCAAGCAATTGATCGGCCTGGCCAAAGACCT
GCAAGTAGTGGGCGAGGCGAGTAACGGCGAGCAGTTGCTGGAGACTTTGCGCCACGTGGCGTGCGAAGTTGTGTTGCTGG
ATATCTCGATGCCCGGTGTGAATGGGCTGGAGGCCATTGCGCGCATCCGTGCACTGAATAACCCGCCGGCGATCCTGGTG
TTGTCCATGCACGATGAAGCGCAAATGGCCGCCCGCGCCTTGAAAGTCGGTGCGGCGGGGTATGCGACCAAAGACAGCGA
CCCGGCCCTGTTGCTGACGGCGATTCGCAAAGTCGCGGCGGGCGGGCGCTATATCGACCCGGACCTGGCTGACCGCATGG
TGTTTGAAGTCGGCTTGACGGACGCGCGGCCGCTGCATTCGCTGCTCTCGGAGCGCGAGTTTTCGGTGTTCGAGCGCCTC
GCCCAGGGCGCCAACGTCAATGACATCGCCCAGCAACTGGCGCTGAGCAGCAAGACCATCAGCACCCACAAGGCGCGCCT
GATGCAAAAGCTGAATATCACGTCCCTGGCCGAATTGGTGAAGTACGCCATGGAACATAAGCTGTTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

37.799

100

0.378
  letA Legionella pneumophila strain ERS1305867

37.799

100

0.378