Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NT239_RS08015 Genome accession   NZ_CP102611
Coordinates   1722362..1722745 (-) Length   127 a.a.
NCBI ID   WP_373976668.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717362..1727745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS08000 (NT239_08000) - 1719222..1721285 (-) 2064 WP_373976666.1 methyl-accepting chemotaxis protein -
  NT239_RS08005 (NT239_08005) - 1721438..1721953 (-) 516 WP_373976667.1 chemotaxis protein CheW -
  NT239_RS08010 (NT239_08010) - 1721970..1722326 (-) 357 WP_373976694.1 PleD family two-component system response regulator -
  NT239_RS08015 (NT239_08015) pilG 1722362..1722745 (-) 384 WP_373976668.1 twitching motility response regulator PilG Regulator
  NT239_RS08020 (NT239_08020) yihA 1723056..1723685 (-) 630 WP_373976669.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NT239_RS08025 (NT239_08025) - 1723827..1724432 (+) 606 WP_373976695.1 cytochrome c -
  NT239_RS08030 (NT239_08030) - 1724503..1726527 (+) 2025 WP_373976670.1 cytochrome c biogenesis protein ResB -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13956.18 Da        Isoelectric Point: 6.7109

>NTDB_id=718146 NT239_RS08015 WP_373976668.1 1722362..1722745(-) (pilG) [Chitinibacter sp. SCUT-21]
MSNLTGVKVMVIDDSNTIRRSAEIFLGQAGCEVILAEDGFDALAKIADHHPDVIFVDVMMPRLDGYQTCSLIKKNPRFKA
TPVVMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLAAVRAHADIV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=718146 NT239_RS08015 WP_373976668.1 1722362..1722745(-) (pilG) [Chitinibacter sp. SCUT-21]
ATGTCCAATTTAACGGGTGTTAAGGTAATGGTGATTGACGATAGCAATACCATTCGCCGAAGCGCTGAGATTTTTTTGGG
GCAAGCGGGGTGCGAAGTAATTTTGGCGGAAGATGGCTTTGATGCGCTTGCTAAAATTGCAGATCATCATCCAGACGTGA
TTTTTGTTGATGTGATGATGCCACGGCTCGATGGATATCAAACGTGTTCACTGATTAAAAAAAATCCGCGTTTTAAGGCA
ACTCCTGTCGTCATGTTATCCTCTAAAGATGGTCTTTTCGATCGTGCGCGTGGCCGCATGGTTGGTTCGGATGAATATCT
GACTAAACCGTTTACGAAAGACAGTTTGCTAGCGGCCGTTCGTGCCCATGCAGACATTGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.5

94.488

0.638
  vicR Streptococcus mutans UA159

39.655

91.339

0.362