Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   KQ693_RS02540 Genome accession   NZ_CP102606
Coordinates   444457..446526 (+) Length   689 a.a.
NCBI ID   WP_267261831.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439457..451526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS02500 (KQ693_02500) - 439481..439936 (+) 456 WP_267261826.1 hypothetical protein -
  KQ693_RS02505 (KQ693_02505) pfkA 439964..440932 (-) 969 WP_267261827.1 6-phosphofructokinase -
  KQ693_RS02510 (KQ693_02510) rsmI 440929..441741 (-) 813 WP_267261828.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KQ693_RS02515 (KQ693_02515) - 441743..442240 (-) 498 WP_038031652.1 hypothetical protein -
  KQ693_RS02520 (KQ693_02520) - 442324..442854 (-) 531 WP_219758912.1 inorganic diphosphatase -
  KQ693_RS02525 (KQ693_02525) - 442865..443515 (-) 651 WP_038031654.1 glycerophosphodiester phosphodiesterase -
  KQ693_RS02530 (KQ693_02530) - 443539..444189 (+) 651 WP_267261829.1 YcxB family protein -
  KQ693_RS02535 (KQ693_02535) comEA 444162..444470 (+) 309 WP_267261830.1 ComEA family DNA-binding protein Machinery gene
  KQ693_RS02540 (KQ693_02540) comA/comEC 444457..446526 (+) 2070 WP_267261831.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KQ693_RS02545 (KQ693_02545) - 446514..447326 (-) 813 WP_267261832.1 ParB/RepB/Spo0J family partition protein -
  KQ693_RS02550 (KQ693_02550) soj 447310..448062 (-) 753 WP_323808505.1 chromosome-partitioning ATPase Soj -
  KQ693_RS02555 (KQ693_02555) rsmG 448056..448784 (-) 729 WP_267262345.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KQ693_RS02560 (KQ693_02560) mnmG 448821..450614 (-) 1794 WP_267261833.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 74171.84 Da        Isoelectric Point: 10.0061

>NTDB_id=718109 KQ693_RS02540 WP_267261831.1 444457..446526(+) (comA/comEC) [Thermus sp. PS18]
MSDPRAVFPKPPLSTWGPGVDLGLGGLLGAWGLFHPWVLLLAPLLLPLLRLPFALGLVFVLLRGLLFPVTEPPYGIRLEG
VFTLHQGTILWQGHRLWVQHYPGLEDGRYRLRGYLVPPQGKRNPGGFDQRTWLLSRGIRGVFHVERAEPLAPLPDPRAPF
RARLAQGLSPPALEVLEGLVLGDKRELEDTYTQFQKAGLAHLLALSGLHVGFLVASLVFLLTPLGRWRYLLALLALPFYL
WLAGPSPSLVRASLMAGLSLLGLFLGLGAAGVLQALGLALFLQLLWWPASLLSLSLQLSYLAVAGIALLLPALPRPQGAR
GYLAGALLTSLAAQVPLVPLLLHRFGFLPLLSPLSNLLALPLASLLVPLGFLKLFLGGLLAPLLEPLAKALLLLAQAASR
GPLLSWGEISPLGFALYYLGLFPLALALHWLLPWRKALLLASLPLLVSLLASWPKPLDLFALDVGQGDALLARLGGAEVL
VDGGRPEQGEKVVRALRALGVEALEVLVATHPDADHHGGLLKVAEEVPIGLALLSPAFPKEHPLVQALQSRKVPILFPGT
GTRLRVGKGSLEVLWPPGPQADDNQSGLVLLLDFAGPKALLLADVPGEVEERLTPPQVAVVKVSHHGSRTGTDEGLLERI
RPQAALIGVGRNPHGHPHPEVLERLDQHGVRVYRTDQNGAVRVLFGYAW

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=718109 KQ693_RS02540 WP_267261831.1 444457..446526(+) (comA/comEC) [Thermus sp. PS18]
ATGTCCGACCCTAGGGCAGTCTTCCCCAAGCCTCCCCTTTCGACCTGGGGTCCAGGGGTGGACCTGGGTCTAGGCGGGCT
CCTGGGAGCCTGGGGGCTTTTCCATCCCTGGGTCCTTCTCCTGGCGCCCTTACTCCTCCCCCTCCTCCGGCTTCCCTTCG
CCCTCGGGCTCGTTTTTGTCCTCCTCCGGGGCCTCCTCTTTCCCGTAACGGAACCTCCTTACGGCATCCGCCTCGAGGGT
GTCTTCACCCTCCACCAAGGCACCATCCTCTGGCAGGGGCACAGGCTCTGGGTGCAGCACTACCCAGGCCTGGAGGATGG
CCGCTACCGGCTGCGGGGGTACCTGGTTCCACCCCAGGGCAAGCGCAATCCCGGGGGCTTTGACCAGCGCACCTGGCTCC
TCTCCCGGGGGATAAGAGGGGTGTTTCACGTGGAACGGGCGGAACCCCTGGCTCCGCTTCCCGACCCTCGGGCTCCCTTC
CGTGCCCGCCTGGCGCAGGGACTCTCGCCCCCTGCCCTCGAGGTCCTGGAAGGGCTGGTCCTGGGGGATAAAAGGGAACT
GGAGGACACCTATACCCAGTTCCAAAAGGCAGGGCTCGCCCATCTTCTGGCCCTCTCGGGCCTCCACGTGGGCTTTCTGG
TGGCAAGCCTGGTTTTCCTTCTCACCCCTTTGGGCCGATGGCGCTACCTCCTGGCCCTCCTCGCTCTACCCTTTTACCTC
TGGCTGGCGGGGCCAAGCCCCTCCTTGGTGCGGGCCAGCCTCATGGCCGGGTTATCCCTCCTGGGCCTCTTCCTCGGCCT
TGGAGCCGCCGGGGTGCTCCAGGCCCTGGGCCTCGCCCTCTTTCTCCAGCTCCTGTGGTGGCCCGCAAGCCTGCTAAGCC
TTTCCCTCCAGCTCTCCTACCTGGCGGTTGCGGGGATCGCCCTCCTCCTGCCCGCCCTCCCCCGACCCCAGGGAGCACGG
GGGTACCTGGCCGGAGCCCTTCTCACCAGCCTGGCCGCCCAGGTCCCCCTGGTTCCCCTTCTCCTTCACCGCTTCGGCTT
CCTACCCCTCCTCTCCCCCCTTAGCAACCTCCTGGCCCTACCCCTGGCCTCCCTCCTGGTACCCCTGGGATTCCTCAAGC
TCTTCCTTGGGGGTCTTCTGGCACCCCTTCTGGAACCTTTGGCCAAGGCCCTCCTTCTCCTGGCCCAGGCCGCAAGCCGT
GGCCCACTCTTAAGCTGGGGGGAAATCTCCCCTTTGGGCTTCGCCCTCTACTACCTTGGGCTTTTCCCCTTGGCCCTGGC
CTTGCACTGGCTTCTCCCCTGGCGGAAAGCCCTCCTCCTTGCCAGCCTTCCCCTTCTGGTCAGCCTCCTCGCCTCCTGGC
CCAAGCCCCTGGACCTCTTCGCCCTGGACGTGGGCCAGGGGGATGCCCTGCTGGCCCGGCTGGGTGGGGCCGAGGTGCTG
GTGGACGGGGGCCGGCCCGAGCAGGGGGAAAAGGTGGTGCGGGCCCTAAGGGCCCTGGGGGTGGAGGCCCTCGAGGTCCT
GGTGGCCACCCACCCCGATGCTGACCACCACGGGGGCCTCCTCAAGGTGGCCGAGGAGGTTCCCATCGGCCTCGCCCTCC
TCTCCCCCGCCTTCCCAAAGGAGCACCCCCTGGTCCAGGCCCTGCAAAGCCGGAAGGTGCCCATCCTCTTCCCCGGAACC
GGCACCCGCCTTCGCGTGGGAAAAGGGAGCCTCGAGGTCCTCTGGCCTCCTGGCCCGCAAGCAGATGACAACCAAAGCGG
TCTGGTCCTCCTCCTGGACTTCGCCGGGCCCAAGGCCCTTCTCCTGGCGGACGTGCCCGGGGAGGTGGAGGAACGGCTAA
CTCCCCCGCAGGTGGCGGTGGTTAAGGTTAGCCACCACGGCTCCCGCACGGGCACGGACGAGGGCCTCCTGGAACGCATC
CGGCCCCAGGCGGCCTTGATAGGCGTGGGAAGGAACCCCCACGGCCACCCCCACCCCGAGGTCTTGGAGCGCCTGGACCA
GCATGGGGTAAGGGTCTACCGCACCGACCAAAACGGCGCGGTGCGGGTCCTTTTTGGCTACGCCTGGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(463-647)

Domain of unknown function (DUF4131) (DUF4131)

(108-148)

Competence protein (Competence)

(179-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

69.63

97.968

0.682