Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PSH70_RS11030 Genome accession   NZ_CP117438
Coordinates   2415764..2416381 (+) Length   205 a.a.
NCBI ID   WP_053255641.1    Uniprot ID   A0ABY1TG68
Organism   Pseudomonas fluorescens strain FP2327     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2410764..2421381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS11005 (PSH70_11000) - 2411356..2412282 (-) 927 WP_305793394.1 alpha/beta hydrolase -
  PSH70_RS11010 (PSH70_11005) - 2412549..2412680 (+) 132 WP_255311527.1 hypothetical protein -
  PSH70_RS11015 (PSH70_11010) - 2412659..2413810 (-) 1152 WP_053255639.1 diguanylate cyclase -
  PSH70_RS11020 (PSH70_11015) - 2413950..2414537 (+) 588 WP_053255640.1 NUDIX domain-containing protein -
  PSH70_RS11025 (PSH70_11020) - 2414544..2415707 (+) 1164 WP_305793395.1 lipase family protein -
  PSH70_RS11030 (PSH70_11025) dinR/lexA 2415764..2416381 (+) 618 WP_053255641.1 transcriptional repressor LexA Regulator
  PSH70_RS11035 (PSH70_11030) imuA 2416381..2416995 (+) 615 WP_053255642.1 translesion DNA synthesis-associated protein ImuA -
  PSH70_RS11040 (PSH70_11035) - 2417003..2418418 (+) 1416 WP_053255643.1 DNA polymerase Y family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22388.69 Da        Isoelectric Point: 6.8763

>NTDB_id=718109 PSH70_RS11030 WP_053255641.1 2415764..2416381(+) (dinR/lexA) [Pseudomonas fluorescens strain FP2327]
MYSMTTLTPRRTAILTFIRERIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEW
LDVPVLGRVAAGLPIGADAEVHSRLQLDPGTFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARLDGEV
TIKRFERHGEHVRLLPRNPAYQPIVVGPDQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=718109 PSH70_RS11030 WP_053255641.1 2415764..2416381(+) (dinR/lexA) [Pseudomonas fluorescens strain FP2327]
ATGTACTCCATGACGACTCTAACTCCCCGCCGCACTGCCATCCTGACCTTTATCCGCGAGCGTATCGCGCAACAAGGCCA
GCCCCCCAGCCTCGCCGAGATCGCCGAGGCGTTTGGCTTCGCCTCGCGCAGTGTGGCTCGCAAGCATGTGGTGGCGCTGA
CCGAAGCCGGCTTCATTGAGGTCAACCCCAATCAGGCGCGTGGTATCCGTCTGCTCAACCAACCGGCACGCCCCGAATGG
CTGGACGTCCCCGTCCTCGGCCGCGTCGCGGCAGGCTTGCCCATCGGCGCCGATGCTGAGGTGCACAGCCGTCTGCAACT
CGACCCTGGCACCTTCGCGAAAACCCCTGACTACCTGCTGCGCGTGCAGGGCGACTCAATGATCGAAGACGGCATTCTCG
ATGGCGACCTGGTGGGCGTACGCCGCAGCGCCGAGGCCTTGAACGGACAAATCGTCGTGGCGCGCCTGGACGGCGAAGTC
ACCATCAAACGCTTCGAGCGTCACGGCGAGCATGTACGCCTGCTGCCACGCAACCCCGCGTATCAACCCATCGTGGTAGG
CCCCGATCAGGACCTGGCCATTGAAGGGGTGTTCTGCGGCCTGGTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(84-198)

LexA DNA binding domain (LexA_DNA_bind)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.13

100

0.395