Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KQ693_RS02535 Genome accession   NZ_CP102606
Coordinates   444162..444470 (+) Length   102 a.a.
NCBI ID   WP_267261830.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439162..449470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS02500 (KQ693_02500) - 439481..439936 (+) 456 WP_267261826.1 hypothetical protein -
  KQ693_RS02505 (KQ693_02505) pfkA 439964..440932 (-) 969 WP_267261827.1 6-phosphofructokinase -
  KQ693_RS02510 (KQ693_02510) rsmI 440929..441741 (-) 813 WP_267261828.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KQ693_RS02515 (KQ693_02515) - 441743..442240 (-) 498 WP_038031652.1 hypothetical protein -
  KQ693_RS02520 (KQ693_02520) - 442324..442854 (-) 531 WP_219758912.1 inorganic diphosphatase -
  KQ693_RS02525 (KQ693_02525) - 442865..443515 (-) 651 WP_038031654.1 glycerophosphodiester phosphodiesterase -
  KQ693_RS02530 (KQ693_02530) - 443539..444189 (+) 651 WP_267261829.1 YcxB family protein -
  KQ693_RS02535 (KQ693_02535) comEA 444162..444470 (+) 309 WP_267261830.1 ComEA family DNA-binding protein Machinery gene
  KQ693_RS02540 (KQ693_02540) comA/comEC 444457..446526 (+) 2070 WP_267261831.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KQ693_RS02545 (KQ693_02545) - 446514..447326 (-) 813 WP_267261832.1 ParB/RepB/Spo0J family partition protein -
  KQ693_RS02550 (KQ693_02550) soj 447310..448062 (-) 753 WP_323808505.1 chromosome-partitioning ATPase Soj -
  KQ693_RS02555 (KQ693_02555) rsmG 448056..448784 (-) 729 WP_267262345.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11193.28 Da        Isoelectric Point: 8.5051

>NTDB_id=718108 KQ693_RS02535 WP_267261830.1 444162..444470(+) (comEA) [Thermus sp. PS18]
MVFLYLLAVALLGLSSLWPKLVPKPQPVRVETLAEASFEPPAPEPISLNQASLEELMSLPGVGPVLAQRIVEGRPYARVE
DLLRVKGIGPATLERLRPYVRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=718108 KQ693_RS02535 WP_267261830.1 444162..444470(+) (comEA) [Thermus sp. PS18]
GTGGTCTTCCTCTACCTCCTCGCGGTAGCCCTCCTGGGTCTTTCCAGCCTCTGGCCCAAGCTGGTCCCGAAACCCCAGCC
GGTGCGGGTGGAAACCCTGGCGGAGGCCAGCTTTGAGCCCCCAGCCCCTGAGCCCATCAGCTTGAACCAGGCCAGCCTCG
AGGAGCTCATGAGCCTCCCTGGGGTCGGCCCCGTGCTGGCCCAGAGGATCGTGGAGGGAAGACCCTACGCCCGGGTGGAG
GACCTCCTGAGGGTCAAGGGCATCGGCCCCGCCACCCTGGAACGGCTCAGGCCCTATGTCCGACCCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

76.471

100

0.765
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.667

100

0.441