Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PSH70_RS10235 Genome accession   NZ_CP117438
Coordinates   2249728..2250369 (+) Length   213 a.a.
NCBI ID   WP_017530522.1    Uniprot ID   A0A9X1C6L0
Organism   Pseudomonas fluorescens strain FP2327     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244728..2255369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS10205 (PSH70_10200) - 2245197..2245898 (+) 702 WP_053255490.1 NAD(P)H-dependent oxidoreductase -
  PSH70_RS10210 (PSH70_10205) - 2245960..2247039 (-) 1080 WP_069552813.1 3-deoxy-7-phosphoheptulonate synthase -
  PSH70_RS10215 (PSH70_10210) - 2247658..2248407 (+) 750 WP_053255492.1 carbon-nitrogen hydrolase family protein -
  PSH70_RS10220 (PSH70_10215) - 2248408..2248854 (+) 447 WP_073636810.1 GNAT family N-acetyltransferase -
  PSH70_RS10225 (PSH70_10220) - 2248890..2249129 (-) 240 WP_053255494.1 DNA-binding protein -
  PSH70_RS10230 (PSH70_10225) - 2249211..2249576 (+) 366 WP_053255495.1 helix-turn-helix domain-containing protein -
  PSH70_RS10235 (PSH70_10230) letA 2249728..2250369 (+) 642 WP_017530522.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PSH70_RS10240 (PSH70_10235) uvrC 2250371..2252194 (+) 1824 WP_078828009.1 excinuclease ABC subunit UvrC -
  PSH70_RS10245 (PSH70_10240) pgsA 2252227..2252787 (+) 561 WP_053255497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSH70_RS10255 (PSH70_10250) - 2253226..2254488 (+) 1263 WP_053255498.1 serine hydrolase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23132.01 Da        Isoelectric Point: 6.2456

>NTDB_id=718107 PSH70_RS10235 WP_017530522.1 2249728..2250369(+) (letA) [Pseudomonas fluorescens strain FP2327]
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLGATTKLLRSHPDIKVVV
VTVCEEDPFPTRLLQAGAAGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTSDSPFDALSEREIQIALMI
VGCQKVQSISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMVDASA

Nucleotide


Download         Length: 642 bp        

>NTDB_id=718107 PSH70_RS10235 WP_017530522.1 2249728..2250369(+) (letA) [Pseudomonas fluorescens strain FP2327]
TTGATTAGGGTGCTAGTAGTCGATGACCATGATCTCGTTCGTACAGGCATTACACGAATGCTGGCTGACATCGATGGCCT
GCAAGTAGTCGGTCAGGCCGAGTCAGGGGAGGAATCCCTGATCAAGGCCCGGGAGTTGAAACCCGATGTGGTTTTGATGG
ACGTCAAGATGCCTGGGATCGGCGGTCTTGGCGCAACTACCAAATTGTTACGCAGCCATCCGGACATCAAAGTCGTGGTG
GTTACCGTGTGCGAGGAAGACCCGTTTCCTACCCGCCTTCTGCAGGCAGGAGCGGCCGGTTACTTGACCAAGGGCGCAGG
CCTGGCGGAGATGGTGCAAGCCATCCGCCTGGTATTTGCTGGCCAGCGGTATATCAGCCCACAGATTGCCCAGCAGTTGG
CGATCAAGTCCTTCCAGCCTACCAGTGACTCGCCGTTTGATGCGTTGTCGGAGCGCGAGATCCAGATCGCCTTGATGATC
GTCGGTTGCCAGAAAGTGCAGTCGATCTCTGACAAGCTGTGCCTGTCGCCTAAAACCGTGAACACCTACCGCTATCGCAT
TTTCGAGAAGCTCGCCATCAGCAGTGATGTTGAATTGACCCTGCTCGCAGTGCGTCACGGCATGGTGGACGCCAGCGCCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X1C6L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

98.592

0.545
  letA Legionella pneumophila strain ERS1305867

55.238

98.592

0.545