Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   IL310_RS08500 Genome accession   NZ_CP117409
Coordinates   1278420..1279490 (+) Length   356 a.a.
NCBI ID   WP_195228624.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273420..1284490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS08485 (IL310_08490) - 1273521..1275830 (+) 2310 WP_201179543.1 cation-translocating P-type ATPase -
  IL310_RS08490 (IL310_08495) xerS 1276511..1277566 (+) 1056 WP_201249019.1 tyrosine recombinase XerS Machinery gene
  IL310_RS08495 (IL310_08500) - 1277650..1277937 (+) 288 WP_274448933.1 hypothetical protein -
  IL310_RS08500 (IL310_08505) xerS 1278420..1279490 (+) 1071 WP_195228624.1 tyrosine recombinase XerS Machinery gene
  IL310_RS08505 (IL310_08510) trmFO 1279535..1280878 (-) 1344 WP_201249076.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IL310_RS08510 (IL310_08515) topA 1280950..1283082 (-) 2133 WP_003131148.1 type I DNA topoisomerase -
  IL310_RS08515 (IL310_08520) - 1283344..1283487 (-) 144 Protein_1266 DNA processing protein DprA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41413.21 Da        Isoelectric Point: 9.6568

>NTDB_id=718036 IL310_RS08500 WP_195228624.1 1278420..1279490(+) (xerS) [Lactococcus lactis strain LB7]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQSFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=718036 IL310_RS08500 WP_195228624.1 1278420..1279490(+) (xerS) [Lactococcus lactis strain LB7]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCCAGTCTTTATAAATATCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTCCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAGGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCTTTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAATCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767