Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   IL310_RS08490 Genome accession   NZ_CP117409
Coordinates   1276511..1277566 (+) Length   351 a.a.
NCBI ID   WP_201249019.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271511..1282566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS08470 (IL310_08475) - 1271880..1272431 (+) 552 WP_201249017.1 DapH/DapD/GlmU-related protein -
  IL310_RS08475 (IL310_08480) - 1272475..1272912 (-) 438 WP_201249018.1 MerR family transcriptional regulator -
  IL310_RS08480 (IL310_08485) - 1273186..1273509 (+) 324 WP_201179542.1 metalloregulator ArsR/SmtB family transcription factor -
  IL310_RS08485 (IL310_08490) - 1273521..1275830 (+) 2310 WP_201179543.1 cation-translocating P-type ATPase -
  IL310_RS08490 (IL310_08495) xerS 1276511..1277566 (+) 1056 WP_201249019.1 tyrosine recombinase XerS Machinery gene
  IL310_RS08495 (IL310_08500) - 1277650..1277937 (+) 288 WP_274448933.1 hypothetical protein -
  IL310_RS08500 (IL310_08505) xerS 1278420..1279490 (+) 1071 WP_195228624.1 tyrosine recombinase XerS Machinery gene
  IL310_RS08505 (IL310_08510) trmFO 1279535..1280878 (-) 1344 WP_201249076.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40696.60 Da        Isoelectric Point: 9.8539

>NTDB_id=718035 IL310_RS08490 WP_201249019.1 1276511..1277566(+) (xerS) [Lactococcus lactis strain LB7]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITSHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDIHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEQDYEKSVSNRAKTSFKKNKRRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYIKDYFEPRSSMKTEVQALFVTDYNQQIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=718035 IL310_RS08490 WP_201249019.1 1276511..1277566(+) (xerS) [Lactococcus lactis strain LB7]
ATGTCAGAAAACCATGGTTATCGTTATAATGTAAATAAACTTATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCACTGAGTATTGCCTCCATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAGCCATGCTAACATCAAAGAAATTACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCACTAAATCGAAC
CATTGCAGCGATTAAGAGCCTATATAACTACTTGTGTGAACAAACTGAAGATATTCACGGAAATACATACATGACAAGAA
ATGTCAGCCGCTTAATTCATATCCGAAAAAAGAGTGAAACCTTGCATTACCGTGCTGCTCAACTGGAAGGTAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAGCAAGACTATGAAAAGTCTGTCAGTAATCGTGCGAAAACAAG
TTTCAAAAAAAATAAAAGAAGAGATTTAGCCATACTAAGCCTCTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GAATCAATCTCAATGATTTAAATCTTGAAACTGGAAAAGTAAGTGTGATGCGAAAAGAGGGGAAAAAGGACGTTGTCCCG
ATTGCTCATTTTTCACATAAATATATAAAAGATTATTTTGAGCCAAGAAGTAGCATGAAGACTGAGGTACAAGCCTTATT
TGTCACAGATTATAACCAACAAATTAGAAAAATCTCAAATGCCTCGATAAACAAGTTGGTTGCAAAGTATTCTGAAGCCT
ATAAAGTCCGTGTAACACCTCACACGCTAAGACATACATTCGCAACAAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAACCAATTAGGACATTCTTCAACCAAACCAACTGAGTTATATACCCATATTGTCAGTGCTGAAGCTAAAGATGC
GTTAAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(185-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.845

99.43

0.456