Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IL310_RS03980 Genome accession   NZ_CP117409
Coordinates   361903..362979 (-) Length   358 a.a.
NCBI ID   WP_010906242.1    Uniprot ID   Q9CE70
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 356903..367979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS03960 (IL310_03965) galE 358927..359907 (+) 981 WP_017865083.1 UDP-glucose 4-epimerase GalE -
  IL310_RS03965 (IL310_03970) - 360030..360977 (+) 948 WP_195229278.1 alpha/beta hydrolase -
  IL310_RS03970 (IL310_03975) - 361019..361369 (-) 351 WP_242481499.1 MerR family transcriptional regulator -
  IL310_RS03975 (IL310_03980) - 361451..361816 (+) 366 WP_201248499.1 carboxymuconolactone decarboxylase family protein -
  IL310_RS03980 (IL310_03985) recF 361903..362979 (-) 1077 WP_010906242.1 DNA replication/repair protein RecF Machinery gene
  IL310_RS03985 (IL310_03990) yaaA 362979..363341 (-) 363 WP_012898492.1 S4 domain-containing protein YaaA -
  IL310_RS03990 (IL310_03995) - 363539..364825 (+) 1287 WP_201248433.1 pitrilysin family protein -
  IL310_RS03995 (IL310_04000) - 364815..366098 (+) 1284 WP_017865078.1 pitrilysin family protein -
  IL310_RS04000 (IL310_04005) - 366362..367258 (+) 897 WP_017865077.1 RodZ family helix-turn-helix domain-containing protein -
  IL310_RS04005 (IL310_04010) pgsA 367299..367871 (+) 573 WP_012898490.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 41356.23 Da        Isoelectric Point: 6.8652

>NTDB_id=718006 IL310_RS03980 WP_010906242.1 361903..362979(-) (recF) [Lactococcus lactis strain LB7]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=718006 IL310_RS03980 WP_010906242.1 361903..362979(-) (recF) [Lactococcus lactis strain LB7]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGACCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

55

100

0.553
  recF Bacillus subtilis subsp. subtilis str. 168

45.977

97.207

0.447