Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   IL310_RS03720 Genome accession   NZ_CP117409
Coordinates   319891..320661 (+) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis strain LB7     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 314891..325661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS03690 (IL310_03695) rplK 315307..315732 (+) 426 WP_004254643.1 50S ribosomal protein L11 -
  IL310_RS03695 (IL310_03700) rplA 316029..316718 (+) 690 WP_004254644.1 50S ribosomal protein L1 -
  IL310_RS03700 (IL310_03705) - 316797..317141 (+) 345 WP_004254648.1 hypothetical protein -
  IL310_RS03705 (IL310_03710) - 317153..317374 (-) 222 WP_010906257.1 hypothetical protein -
  IL310_RS03710 (IL310_03715) - 317387..317788 (-) 402 WP_004254651.1 HIT family protein -
  IL310_RS03715 (IL310_03720) - 318067..319872 (+) 1806 WP_033900792.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  IL310_RS03720 (IL310_03725) pptA 319891..320661 (+) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  IL310_RS03725 (IL310_03730) - 320654..321673 (+) 1020 WP_004254656.1 ABC transporter permease -
  IL310_RS03730 (IL310_03735) - 321712..322338 (-) 627 WP_201248405.1 copper homeostasis protein CutC -
  IL310_RS03735 (IL310_03740) - 322551..323732 (-) 1182 WP_201248406.1 site-specific integrase -
  IL310_RS03740 (IL310_03745) - 324279..324473 (-) 195 WP_201248498.1 bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=718005 IL310_RS03720 WP_004254655.1 319891..320661(+) (pptA) [Lactococcus lactis strain LB7]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=718005 IL310_RS03720 WP_004254655.1 319891..320661(+) (pptA) [Lactococcus lactis strain LB7]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGGGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633