Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   EL277_RS06035 Genome accession   NZ_AP018936
Coordinates   1154070..1155419 (-) Length   449 a.a.
NCBI ID   WP_000886219.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149070..1160419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS06015 (SPNU_1144) - 1150724..1152595 (-) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
  EL277_RS06020 (SPNU_1145) - 1152670..1152924 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  EL277_RS06025 (SPNU_1146) relB 1152926..1153168 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EL277_RS06030 (SPNU_1147) vicX 1153259..1154068 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  EL277_RS06035 (SPNU_1148) micB 1154070..1155419 (-) 1350 WP_000886219.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL277_RS06040 (SPNU_1149) micA 1155412..1156116 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EL277_RS06045 (SPNU_1150) mutY 1156172..1157347 (-) 1176 WP_000886146.1 A/G-specific adenine glycosylase -
  EL277_RS12565 - 1157444..1157569 (+) 126 WP_001818232.1 hypothetical protein -
  EL277_RS06050 (SPNU_1151) - 1157675..1159345 (-) 1671 WP_000845295.1 formate--tetrahydrofolate ligase -
  EL277_RS06055 (SPNU_1152) coaB 1159575..1160264 (+) 690 WP_000699501.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51698.39 Da        Isoelectric Point: 4.9706

>NTDB_id=71791 EL277_RS06035 WP_000886219.1 1154070..1155419(-) (micB) [Streptococcus pneumoniae strain NU83127]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQVNQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=71791 EL277_RS06035 WP_000886219.1 1154070..1155419(-) (micB) [Streptococcus pneumoniae strain NU83127]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCAGTTGAAGCAAGTCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGGGTCTGAAATCACCAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACTAACCGTCGGGGTCAGATTATCATGATTAACGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGCGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAGACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCACCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAGAAAAAATATGAGTTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTACTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(98-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.555

100

0.996
  vicK Streptococcus mutans UA159

69.9

89.532

0.626

Multiple sequence alignment