Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NUU05_RS03705 Genome accession   NZ_CP102538
Coordinates   690686..691612 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 685686..696612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS03695 (NUU05_03680) amiA 687164..689131 (+) 1968 WP_011681417.1 peptide ABC transporter substrate-binding protein Regulator
  NUU05_RS03700 (NUU05_03685) amiC 689193..690686 (+) 1494 WP_011681416.1 ABC transporter permease Regulator
  NUU05_RS03705 (NUU05_03690) amiD 690686..691612 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  NUU05_RS03710 (NUU05_03695) amiE 691622..692707 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  NUU05_RS03715 (NUU05_03700) amiF 692700..693629 (+) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  NUU05_RS03720 (NUU05_03705) - 693683..694468 (-) 786 WP_011681414.1 hypothetical protein -
  NUU05_RS03725 (NUU05_03710) - 694480..695178 (-) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  NUU05_RS03730 (NUU05_03715) - 695183..695560 (-) 378 WP_011681413.1 GntR family transcriptional regulator -
  NUU05_RS03735 (NUU05_03720) - 695745..696539 (+) 795 WP_011681412.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=717625 NUU05_RS03705 WP_002946409.1 690686..691612(+) (amiD) [Streptococcus thermophilus strain TH-4]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=717625 NUU05_RS03705 WP_002946409.1 690686..691612(+) (amiD) [Streptococcus thermophilus strain TH-4]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964