Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NUU05_RS03715 Genome accession   NZ_CP102538
Coordinates   692700..693629 (+) Length   309 a.a.
NCBI ID   WP_011681415.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 687700..698629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS03700 (NUU05_03685) amiC 689193..690686 (+) 1494 WP_011681416.1 ABC transporter permease Regulator
  NUU05_RS03705 (NUU05_03690) amiD 690686..691612 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  NUU05_RS03710 (NUU05_03695) amiE 691622..692707 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  NUU05_RS03715 (NUU05_03700) amiF 692700..693629 (+) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  NUU05_RS03720 (NUU05_03705) - 693683..694468 (-) 786 WP_011681414.1 hypothetical protein -
  NUU05_RS03725 (NUU05_03710) - 694480..695178 (-) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  NUU05_RS03730 (NUU05_03715) - 695183..695560 (-) 378 WP_011681413.1 GntR family transcriptional regulator -
  NUU05_RS03735 (NUU05_03720) - 695745..696539 (+) 795 WP_011681412.1 HAD-IIB family hydrolase -
  NUU05_RS03740 (NUU05_03725) - 696532..697350 (+) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=717627 NUU05_RS03715 WP_011681415.1 692700..693629(+) (amiF) [Streptococcus thermophilus strain TH-4]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=717627 NUU05_RS03715 WP_011681415.1 692700..693629(+) (amiF) [Streptococcus thermophilus strain TH-4]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

100

1
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977