Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NUU05_RS01670 Genome accession   NZ_CP102538
Coordinates   297675..298631 (+) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292675..303631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS01630 (NUU05_01620) - 293572..293934 (+) 363 WP_011226630.1 DUF1033 family protein -
  NUU05_RS01635 (NUU05_01625) comGA/cglA/cilD 294015..294956 (+) 942 WP_011681689.1 competence type IV pilus ATPase ComGA Machinery gene
  NUU05_RS01640 (NUU05_01630) comYB 294838..295938 (+) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  NUU05_RS01645 (NUU05_01635) comYC 295935..296261 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  NUU05_RS01650 (NUU05_01640) comYD 296221..296649 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  NUU05_RS01655 (NUU05_01645) comGE 296621..296914 (+) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  NUU05_RS01660 (NUU05_01650) comYF 296898..297335 (+) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  NUU05_RS01665 (NUU05_01655) comGG 297313..297630 (+) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  NUU05_RS01670 (NUU05_01660) comYH 297675..298631 (+) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  NUU05_RS01675 (NUU05_01665) - 298687..299880 (+) 1194 WP_014608740.1 acetate kinase -
  NUU05_RS01680 (NUU05_01670) - 300129..300326 (+) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  NUU05_RS01685 (NUU05_01675) - 300338..300613 (+) 276 WP_011681681.1 hypothetical protein -
  NUU05_RS01690 (NUU05_01680) - 300657..300995 (+) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  NUU05_RS01695 (NUU05_01685) - 301069..301512 (+) 444 WP_011681680.1 hypothetical protein -
  NUU05_RS01700 (NUU05_01690) - 301609..302271 (+) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  NUU05_RS01705 (NUU05_01695) proC 302301..303071 (-) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=717611 NUU05_RS01670 WP_011681684.1 297675..298631(+) (comYH) [Streptococcus thermophilus strain TH-4]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=717611 NUU05_RS01670 WP_011681684.1 297675..298631(+) (comYH) [Streptococcus thermophilus strain TH-4]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682