Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MGCS36083_RS07685 Genome accession   NZ_CP117285
Coordinates   1532565..1533161 (-) Length   198 a.a.
NCBI ID   WP_275926262.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1527565..1538161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36083_RS07670 (MGCS36083_03124) - 1528975..1529670 (-) 696 WP_003057977.1 TIGR02206 family membrane protein -
  MGCS36083_RS07675 (MGCS36083_03126) - 1529774..1531141 (-) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  MGCS36083_RS07680 (MGCS36083_03128) - 1531347..1532393 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  MGCS36083_RS07685 (MGCS36083_03130) recR 1532565..1533161 (-) 597 WP_275926262.1 recombination mediator RecR Machinery gene
  MGCS36083_RS07690 (MGCS36083_03132) pbp2b 1533173..1535227 (-) 2055 WP_046166022.1 penicillin-binding protein PBP2B -
  MGCS36083_RS07695 (MGCS36083_03134) - 1535334..1536104 (-) 771 WP_003051604.1 formate/nitrite transporter family protein -
  MGCS36083_RS07700 (MGCS36083_03136) - 1536231..1536773 (-) 543 WP_084916487.1 hypothetical protein -
  MGCS36083_RS07705 (MGCS36083_03138) - 1536875..1537396 (-) 522 WP_003051609.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21701.79 Da        Isoelectric Point: 4.5850

>NTDB_id=717420 MGCS36083_RS07685 WP_275926262.1 1532565..1533161(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083]
MFYPTPIEKLIESYSKLPGIGVKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=717420 MGCS36083_RS07685 WP_275926262.1 1532565..1533161(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083]
GTGTTTTACCCAACCCCTATTGAAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGATGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCGTAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5