Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   MGCS36089_RS08585 Genome accession   NZ_CP117284
Coordinates   1740224..1741258 (-) Length   344 a.a.
NCBI ID   WP_084916754.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735224..1746258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS08550 (MGCS36089_03478) - 1735849..1736151 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  MGCS36089_RS08555 (MGCS36089_03480) rnpM 1736144..1736440 (-) 297 WP_003062190.1 RNase P modulator RnpM -
  MGCS36089_RS08560 (MGCS36089_03482) nusA 1736456..1737613 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  MGCS36089_RS08565 (MGCS36089_03484) rimP 1737756..1738238 (-) 483 WP_155778083.1 ribosome maturation factor RimP -
  MGCS36089_RS08575 (MGCS36089_03488) trmB 1738733..1739368 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  MGCS36089_RS08580 (MGCS36089_03490) ccrZ 1739368..1740159 (-) 792 WP_003052472.1 cell cycle regulator CcrZ -
  MGCS36089_RS08585 (MGCS36089_03492) pptB 1740224..1741258 (-) 1035 WP_084916754.1 ABC transporter permease Regulator
  MGCS36089_RS08590 (MGCS36089_03494) pptA 1741261..1741986 (-) 726 WP_012767492.1 ABC transporter ATP-binding protein Regulator
  MGCS36089_RS08595 (MGCS36089_03496) - 1742058..1742477 (+) 420 WP_012767493.1 HIT family protein -
  MGCS36089_RS08600 (MGCS36089_03498) - 1742474..1742803 (+) 330 WP_003057072.1 hypothetical protein -
  MGCS36089_RS08605 (MGCS36089_03500) brpA 1742961..1744229 (-) 1269 WP_041789135.1 biofilm formation/cell division transcriptional regulator BrpA -
  MGCS36089_RS08610 (MGCS36089_03502) - 1744241..1744762 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  MGCS36089_RS08615 (MGCS36089_03504) tsaE 1744755..1745198 (-) 444 WP_065361353.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40222.47 Da        Isoelectric Point: 10.2928

>NTDB_id=717327 MGCS36089_RS08585 WP_084916754.1 1740224..1741258(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MKALFLKRRRDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=717327 MGCS36089_RS08585 WP_084916754.1 1740224..1741258(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGAAAGCATTATTTCTGAAACGCCGTCGAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.093

100

0.471
  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465