Detailed information NTG0717311

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LCN95_RS21085
• Genome accession: NZ_CP102490
• Coordinates: 4335798..4336598 (+)
• Length: 266 a.a.
• NCBI ID: WP_019705879.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain BA13643
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4330798..4341598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCN95_RS21050 (LCN95_21055)	gspH	4330954..4331469 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
LCN95_RS21055 (LCN95_21060)	gspI	4331466..4331831 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
LCN95_RS21060 (LCN95_21065)	gspJ	4331828..4332424 (+)	597	WP_019705881.1	type II secretion system minor pseudopilin GspJ	-
LCN95_RS21065 (LCN95_21070)	gspK	4332421..4333407 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
LCN95_RS21070 (LCN95_21075)	gspL	4333394..4334587 (+)	1194	WP_019705880.1	type II secretion system protein GspL	-
LCN95_RS21075 (LCN95_21080)	-	4334580..4335065 (+)	486	WP_004183037.1	type II secretion system protein M	-
LCN95_RS21080 (LCN95_21085)	-	4335055..4335801 (+)	747	WP_004145897.1	type II secretion system protein N	-
LCN95_RS21085 (LCN95_21090)	pilD	4335798..4336598 (+)	801	WP_019705879.1	prepilin peptidase	Machinery gene
LCN95_RS21090 (LCN95_21095)	hrpB	4336646..4339075 (-)	2430	WP_267272256.1	ATP-dependent helicase HrpB	-
LCN95_RS21095 (LCN95_21100)	thpR	4339148..4339684 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
LCN95_RS21100 (LCN95_21105)	sfsA	4339684..4340400 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
LCN95_RS21105 (LCN95_21110)	dksA	4340563..4341018 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29435.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=717311 LCN95_RS21085 WP_019705879.1 4335798..4336598(+) (pilD) [Klebsiella pneumoniae strain BA13643]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=717311 LCN95_RS21085 WP_019705879.1 4335798..4336598(+) (pilD) [Klebsiella pneumoniae strain BA13643]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCTTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425