Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PQQ28_RS06685 Genome accession   NZ_CP117235
Coordinates   1287407..1288144 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ATCC 25922     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282407..1293144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ28_RS06655 (PQQ28_06655) yfiL 1282566..1282931 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  PQQ28_RS06660 (PQQ28_06660) aroF 1283141..1284211 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PQQ28_RS06665 (PQQ28_06665) tyrA 1284222..1285343 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PQQ28_RS06670 (PQQ28_06670) pheA 1285386..1286546 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  PQQ28_RS06675 (PQQ28_06675) pheL 1286645..1286692 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PQQ28_RS06680 (PQQ28_06680) raiA 1286796..1287137 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PQQ28_RS06685 (PQQ28_06685) comL 1287407..1288144 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PQQ28_RS06690 (PQQ28_06690) rluD 1288279..1289259 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PQQ28_RS06695 (PQQ28_06695) yfiH 1289256..1289987 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  PQQ28_RS06700 (PQQ28_06700) clpC 1290117..1292690 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=717010 PQQ28_RS06685 WP_000197686.1 1287407..1288144(-) (comL) [Escherichia coli strain ATCC 25922]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=717010 PQQ28_RS06685 WP_000197686.1 1287407..1288144(-) (comL) [Escherichia coli strain ATCC 25922]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376