Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NR793_RS13350 Genome accession   NZ_CP102434
Coordinates   1068994..1070397 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063994..1075397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS13330 (NR793_13355) rsxB 1064506..1065102 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  NR793_RS13335 (NR793_13360) rsxA 1065106..1065684 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  NR793_RS13345 (NR793_13370) uvrB 1066675..1068705 (+) 2031 WP_005482400.1 excinuclease ABC subunit UvrB -
  NR793_RS13350 (NR793_13375) luxO 1068994..1070397 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NR793_RS13355 (NR793_13380) luxU 1070400..1070738 (+) 339 WP_005482417.1 quorum-sensing phosphorelay protein LuxU -
  NR793_RS13360 (NR793_13385) - 1070815..1071708 (-) 894 WP_005482407.1 YvcK family protein -
  NR793_RS13365 (NR793_13390) moaA 1072004..1072993 (+) 990 WP_005482425.1 GTP 3',8-cyclase MoaA -
  NR793_RS13370 (NR793_13395) moaB 1073096..1073608 (+) 513 WP_005482393.1 molybdenum cofactor biosynthesis protein B -
  NR793_RS13375 (NR793_13400) moaC 1073635..1074114 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  NR793_RS13380 (NR793_13405) moaD 1074111..1074368 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  NR793_RS13385 (NR793_13410) moaE 1074370..1074825 (+) 456 WP_005490611.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=716973 NR793_RS13350 WP_005461534.1 1068994..1070397(+) (luxO) [Vibrio parahaemolyticus strain RMDVP1]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=716973 NR793_RS13350 WP_005461534.1 1068994..1070397(+) (luxO) [Vibrio parahaemolyticus strain RMDVP1]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
TTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCAGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368