Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   PQQ26_RS04595 Genome accession   NZ_CP117230
Coordinates   965154..965723 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 25923     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 960154..970723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ26_RS04575 (PQQ26_04575) - 961657..963015 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  PQQ26_RS04580 (PQQ26_04580) - 963154..964665 (+) 1512 WP_000414169.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  PQQ26_RS04595 (PQQ26_04595) comK/comK1 965154..965723 (-) 570 WP_000287265.1 competence protein ComK Regulator
  PQQ26_RS04600 (PQQ26_04600) - 965933..966151 (+) 219 WP_000876825.1 IDEAL domain-containing protein -
  PQQ26_RS04605 (PQQ26_04605) - 966232..967218 (-) 987 WP_000668822.1 lipoate--protein ligase -
  PQQ26_RS04610 (PQQ26_04610) - 967417..967593 (+) 177 WP_000214898.1 YkvS family protein -
  PQQ26_RS04615 (PQQ26_04615) - 967608..968210 (+) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  PQQ26_RS04620 (PQQ26_04620) - 969127..969228 (+) 102 WP_001790623.1 hypothetical protein -
  PQQ26_RS04625 (PQQ26_04625) - 969250..969510 (+) 261 WP_223200471.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=716923 PQQ26_RS04595 WP_000287265.1 965154..965723(-) (comK/comK1) [Staphylococcus aureus strain ATCC 25923]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=716923 PQQ26_RS04595 WP_000287265.1 965154..965723(-) (comK/comK1) [Staphylococcus aureus strain ATCC 25923]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCACCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterProScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1