Detailed information NTG0716913

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NRG74_RS00510
• Genome accession: NZ_CP102428
• Coordinates: 113079..115319 (+)
• Length: 746 a.a.
• NCBI ID: WP_257705475.1
• Uniprot ID: -
• Organism: Pseudomonas oryzihabitans strain YY7
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 108079..120319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRG74_RS00480 (NRG74_00480)	-	108102..108818 (-)	717	WP_257705471.1	glycerophosphodiester phosphodiesterase family protein	-
NRG74_RS00485 (NRG74_00485)	-	108834..109124 (-)	291	WP_257705472.1	phosphodiesterase	-
NRG74_RS00490 (NRG74_00490)	-	109121..109672 (-)	552	WP_017639771.1	PilZ domain-containing protein	-
NRG74_RS00495 (NRG74_00495)	-	109780..111030 (+)	1251	WP_093256004.1	lipoprotein-releasing ABC transporter permease subunit	-
NRG74_RS00500 (NRG74_00500)	lolD	111023..111724 (+)	702	WP_257705473.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
NRG74_RS00505 (NRG74_00505)	-	111732..112973 (+)	1242	WP_257705474.1	lipoprotein-releasing ABC transporter permease subunit	-
NRG74_RS00510 (NRG74_00510)	comA	113079..115319 (+)	2241	WP_257705475.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NRG74_RS00515 (NRG74_00515)	exbB	115368..116003 (+)	636	WP_257705476.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NRG74_RS00520 (NRG74_00520)	-	116000..116440 (+)	441	WP_017639766.1	biopolymer transporter ExbD	-
NRG74_RS00525 (NRG74_00525)	lpxK	116437..117444 (+)	1008	WP_257705477.1	tetraacyldisaccharide 4'-kinase	-
NRG74_RS00530 (NRG74_00530)	-	117459..117644 (+)	186	WP_007162406.1	Trm112 family protein	-
NRG74_RS00535 (NRG74_00535)	kdsB	117641..118414 (+)	774	WP_257705478.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NRG74_RS00540 (NRG74_00540)	-	118421..118888 (+)	468	WP_173149665.1	low molecular weight protein-tyrosine-phosphatase	-
NRG74_RS00545 (NRG74_00545)	murB	118878..119900 (+)	1023	WP_257705479.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 79205.75 Da
• Isoelectric Point: 10.5580

>NTDB_id=716913 NRG74_RS00510 WP_257705475.1 113079..115319(+) (comA) [Pseudomonas oryzihabitans strain YY7]
MRAALLSFALGVLFLRAFASLPSLPLLAALAAMALGLLLTRFLALGACGLGLAWALLNAHWALDDRLAPALEQRVLWIEG
QISGLPAVDADAVVFVLAGATSRRDLKLPARIRLNWHGGPRPLAGERWRLAAELRGPAGLVNPLGQDREAWLLAQGIGAT
GSVKDGQRLAAASGLATWRDGIRQYLQTRNPAGQGGLLAALVVGDGSGITDAQWQLFQDTGTVHLMVISGQHISLVALSV
YAGVVLLARRGLWPSRLPWRLSAAVLTIATALGYGLLAGFEVPVQRACVMVTLGLLWQLGRQQVRLADAVLLALVLVLAA
NPLVSLLTGFWLSFGAVLLLLWSFAGRLGRLPWWATLGRAQWCMAVGLAPLLLALGLPLSLSGPLANALAVPLMDLAIVP
LALVGTLLSLLWSPLGEPALWLAGGLLQGLLWVLTGLAHLAAAWQPVLAPAWTLWLAGLGALLALLPAGVPLRGLGALLM
LPGLFPPVPAPGEGLARITVLDVGQGLAVLVRTRDHALLYDAGPRQGSYDSGARVVLPNLKGTGIDTLDVMLLSHADADH
AGGALAVARGLPPGRVLSGEVGRLQPQLRARDCEDGARWEWNGVGFTTWWRPDADSNAASCVLRVEARGERLLLTGDIDA
RREAELVASGKPLAAEWLVAPHHGSRSGSSAGFIDAVQPRGVLISRGLNNRYGHPHPQVLARYRERGVLPYDTAALGALT
WTLGRWEVPRGQRQERHWWRIPPPTP

Nucleotide

• Length: 2241 bp

>NTDB_id=716913 NRG74_RS00510 WP_257705475.1 113079..115319(+) (comA) [Pseudomonas oryzihabitans strain YY7]
ATGCGCGCCGCTCTGCTGTCCTTCGCCCTCGGCGTGCTGTTCCTGCGCGCCTTCGCCTCGCTGCCGTCGTTGCCGCTGCT
GGCGGCCCTCGCGGCGATGGCCCTGGGGCTGCTGCTGACCCGCTTCCTGGCCCTTGGCGCCTGCGGCCTGGGCCTGGCCT
GGGCGTTGCTCAATGCCCACTGGGCCCTGGACGATCGTCTGGCTCCGGCGCTGGAGCAGCGGGTGCTGTGGATCGAAGGC
CAGATCAGCGGCCTGCCCGCGGTGGACGCCGACGCGGTGGTCTTCGTGCTCGCCGGGGCTACCAGCCGCCGCGACCTGAA
GCTACCGGCGCGGATCCGCCTGAACTGGCACGGTGGTCCCCGTCCGCTGGCCGGCGAACGCTGGCGCCTGGCGGCGGAGT
TGCGCGGCCCCGCGGGCCTGGTCAACCCCCTGGGCCAGGATCGCGAAGCCTGGCTGCTGGCCCAGGGCATCGGCGCCACC
GGCAGCGTCAAGGATGGCCAGCGCCTGGCGGCGGCCAGTGGCCTGGCGACCTGGCGCGACGGTATCCGGCAATACCTGCA
GACCCGCAATCCGGCCGGACAGGGCGGGTTGCTGGCCGCCCTGGTGGTGGGCGATGGCTCGGGCATCACCGATGCCCAGT
GGCAGCTGTTCCAGGATACCGGCACCGTGCACCTGATGGTGATCTCCGGGCAGCACATCAGCCTGGTCGCCCTCAGCGTC
TATGCCGGGGTGGTCCTCCTGGCGCGCCGTGGTCTCTGGCCAAGCCGGTTGCCCTGGCGCCTGTCGGCCGCGGTGCTGAC
GATCGCCACCGCGTTGGGCTACGGACTGCTAGCCGGCTTCGAGGTGCCGGTACAGCGCGCCTGCGTCATGGTCACCCTGG
GGCTGCTCTGGCAACTGGGCCGCCAGCAGGTTCGCCTGGCGGACGCCGTCCTGCTGGCCCTGGTACTGGTGCTGGCGGCC
AATCCCCTGGTCAGTCTGCTGACGGGTTTCTGGCTCTCCTTTGGCGCCGTGCTGTTGCTGCTCTGGAGCTTCGCCGGCCG
TCTGGGCCGATTGCCCTGGTGGGCTACCCTCGGGCGGGCCCAGTGGTGCATGGCCGTGGGGCTGGCGCCGCTGCTCCTGG
CGCTGGGCCTGCCCCTGAGTCTGAGCGGTCCGCTGGCCAACGCCCTGGCCGTGCCGCTGATGGACCTGGCCATCGTGCCC
CTGGCGCTGGTGGGTACCCTGCTGTCGCTGCTCTGGTCGCCGCTGGGCGAGCCCGCGTTGTGGCTGGCCGGTGGGCTGTT
GCAGGGACTGCTCTGGGTGCTGACCGGGTTGGCGCATCTGGCCGCCGCCTGGCAGCCCGTATTGGCGCCTGCCTGGACGC
TGTGGCTGGCAGGACTGGGGGCGTTGCTGGCCCTGCTGCCCGCGGGCGTGCCGCTGCGCGGCCTTGGCGCGCTGCTGATG
CTGCCCGGGCTGTTTCCCCCGGTGCCTGCGCCCGGGGAAGGGCTGGCGCGGATCACCGTATTGGACGTGGGGCAGGGACT
GGCCGTGCTGGTGCGCACCCGTGACCATGCCCTGCTCTACGACGCCGGTCCGCGCCAGGGCAGCTATGACAGCGGCGCCC
GGGTCGTCCTGCCCAACCTGAAAGGCACCGGCATCGATACCCTGGATGTCATGCTGCTCAGTCATGCCGATGCCGACCAT
GCCGGCGGTGCGCTGGCCGTGGCCAGGGGGCTGCCGCCGGGCCGGGTGCTCAGTGGTGAGGTGGGTCGCCTGCAGCCGCA
ATTGCGCGCCCGGGATTGTGAAGACGGCGCCCGCTGGGAGTGGAACGGGGTCGGCTTCACCACCTGGTGGCGTCCCGATG
CGGATTCCAATGCCGCCTCCTGTGTACTCCGCGTCGAGGCCAGGGGCGAGCGCCTGCTGCTGACCGGCGATATCGATGCT
CGCCGCGAGGCGGAGTTGGTGGCCAGTGGCAAGCCCCTGGCGGCGGAGTGGCTCGTCGCCCCGCACCATGGCAGTCGCAG
TGGCTCCAGCGCCGGTTTCATCGACGCCGTCCAGCCACGCGGCGTGCTGATCTCCCGCGGGCTGAACAATCGCTATGGCC
ATCCCCATCCCCAGGTGCTGGCGCGCTATCGCGAGCGCGGCGTGCTGCCCTACGACACCGCCGCGCTAGGCGCCCTGACC
TGGACCCTCGGTCGCTGGGAGGTACCGCGTGGTCAGCGCCAGGAGCGTCACTGGTGGCGAATACCCCCGCCGACACCCTA
A

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-465)

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-716)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	56.172	96.649	0.543
comA	Ralstonia pseudosolanacearum GMI1000	35.658	100	0.363