Detailed information NTG0716616

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NRG23_RS23765
• Genome accession: NZ_CP102374
• Coordinates: 5248926..5250254 (-)
• Length: 442 a.a.
• NCBI ID: WP_257372434.1
• Uniprot ID: -
• Organism: Pseudomonas sp. T8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5243926..5255254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRG23_RS23750 (NRG23_23750)	-	5244288..5247359 (+)	3072	WP_257372432.1	pilus assembly protein	-
NRG23_RS23755 (NRG23_23755)	-	5247373..5247774 (+)	402	WP_009050937.1	type IV pilin protein	-
NRG23_RS23760 (NRG23_23760)	thiO	5247829..5248929 (+)	1101	WP_257372433.1	glycine oxidase ThiO	-
NRG23_RS23765 (NRG23_23765)	pilR	5248926..5250254 (-)	1329	WP_257372434.1	sigma-54 dependent transcriptional regulator	Regulator
NRG23_RS23770 (NRG23_23770)	-	5250528..5250761 (-)	234	WP_007924721.1	PP0621 family protein	-
NRG23_RS23775 (NRG23_23775)	-	5250896..5251918 (-)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
NRG23_RS23780 (NRG23_23780)	rluD	5252071..5253033 (+)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
NRG23_RS23785 (NRG23_23785)	pgeF	5253030..5253755 (+)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48807.12 Da
• Isoelectric Point: 8.2803

>NTDB_id=716616 NRG23_RS23765 WP_257372434.1 5248926..5250254(-) (pilR) [Pseudomonas sp. T8]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGDSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGVHPAISPGPAPVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=716616 NRG23_RS23765 WP_257372434.1 5248926..5250254(-) (pilR) [Pseudomonas sp. T8]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGACTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAATCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTAGCACTCCAGGGCTACGACTTTCC
CGGCAACGTACGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGTACACCCGGCCATCTCGCCCGGCCCGGCACCGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTATAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.667	100	0.67
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457