Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NRG23_RS10260 Genome accession   NZ_CP102374
Coordinates   2300612..2302843 (-) Length   743 a.a.
NCBI ID   WP_257374595.1    Uniprot ID   -
Organism   Pseudomonas sp. T8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295612..2307843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG23_RS10225 (NRG23_10225) murB 2295989..2297008 (-) 1020 WP_257374594.1 UDP-N-acetylmuramate dehydrogenase -
  NRG23_RS10230 (NRG23_10230) - 2297005..2297469 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  NRG23_RS10235 (NRG23_10235) kdsB 2297469..2298233 (-) 765 WP_009047820.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NRG23_RS10240 (NRG23_10240) - 2298230..2298415 (-) 186 WP_007931663.1 Trm112 family protein -
  NRG23_RS10245 (NRG23_10245) lpxK 2298439..2299449 (-) 1011 WP_028683134.1 tetraacyldisaccharide 4'-kinase -
  NRG23_RS10250 (NRG23_10250) - 2299449..2299877 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  NRG23_RS10255 (NRG23_10255) exbB 2299874..2300509 (-) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NRG23_RS10260 (NRG23_10260) comA 2300612..2302843 (-) 2232 WP_257374595.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NRG23_RS10265 (NRG23_10265) - 2302992..2303507 (+) 516 WP_009047815.1 DUF2062 domain-containing protein -
  NRG23_RS10270 (NRG23_10270) - 2303556..2304335 (-) 780 WP_007931651.1 ABC transporter permease -
  NRG23_RS10275 (NRG23_10275) - 2304332..2305264 (-) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  NRG23_RS10280 (NRG23_10280) - 2305397..2306020 (-) 624 WP_124339768.1 glutathione S-transferase family protein -
  NRG23_RS10285 (NRG23_10285) - 2306063..2306722 (-) 660 WP_038580923.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81355.49 Da        Isoelectric Point: 10.0461

>NTDB_id=716600 NRG23_RS10260 WP_257374595.1 2300612..2302843(-) (comA) [Pseudomonas sp. T8]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLPVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLSAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDVLAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=716600 NRG23_RS10260 WP_257374595.1 2300612..2302843(-) (comA) [Pseudomonas sp. T8]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGGCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTACTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGCCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTAGTGCTGC
CATCGTTGCGTAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTGTCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGTCCTGGCGGAA
CGAGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCTTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.534

96.77

0.624