Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NRG23_RS10255 Genome accession   NZ_CP102374
Coordinates   2299874..2300509 (-) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas sp. T8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2294874..2305509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG23_RS10220 (NRG23_10220) - 2295270..2295740 (-) 471 WP_009047823.1 (2Fe-2S)-binding protein -
  NRG23_RS10225 (NRG23_10225) murB 2295989..2297008 (-) 1020 WP_257374594.1 UDP-N-acetylmuramate dehydrogenase -
  NRG23_RS10230 (NRG23_10230) - 2297005..2297469 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  NRG23_RS10235 (NRG23_10235) kdsB 2297469..2298233 (-) 765 WP_009047820.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NRG23_RS10240 (NRG23_10240) - 2298230..2298415 (-) 186 WP_007931663.1 Trm112 family protein -
  NRG23_RS10245 (NRG23_10245) lpxK 2298439..2299449 (-) 1011 WP_028683134.1 tetraacyldisaccharide 4'-kinase -
  NRG23_RS10250 (NRG23_10250) - 2299449..2299877 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  NRG23_RS10255 (NRG23_10255) exbB 2299874..2300509 (-) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NRG23_RS10260 (NRG23_10260) comA 2300612..2302843 (-) 2232 WP_257374595.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NRG23_RS10265 (NRG23_10265) - 2302992..2303507 (+) 516 WP_009047815.1 DUF2062 domain-containing protein -
  NRG23_RS10270 (NRG23_10270) - 2303556..2304335 (-) 780 WP_007931651.1 ABC transporter permease -
  NRG23_RS10275 (NRG23_10275) - 2304332..2305264 (-) 933 WP_009047814.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=716599 NRG23_RS10255 WP_009047817.1 2299874..2300509(-) (exbB) [Pseudomonas sp. T8]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=716599 NRG23_RS10255 WP_009047817.1 2299874..2300509(-) (exbB) [Pseudomonas sp. T8]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTTGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGGACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863