NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NRL09_RS18945	Genome accession	NZ_CP102334
Coordinates	4062120..4062995 (+)	Length	291 a.a.
NCBI ID	WP_052814465.1	Uniprot ID	A0AAW9F3H3
Organism	Aeromonas caviae strain BC11
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4057120..4067995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRL09_RS18925 (NRL09_18930)	nadC	4057364..4058227 (+)	864	WP_337984051.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NRL09_RS18930 (NRL09_18935)	-	4058424..4058963 (+)	540	WP_337984052.1	pilin	-
NRL09_RS18935 (NRL09_18940)	pilB	4058967..4060673 (+)	1707	WP_337984053.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NRL09_RS18940 (NRL09_18945)	pilC	4060801..4062042 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
NRL09_RS18945 (NRL09_18950)	pilD	4062120..4062995 (+)	876	WP_052814465.1	prepilin peptidase	Machinery gene
NRL09_RS18950 (NRL09_18955)	coaE	4063014..4063628 (+)	615	WP_052814464.1	dephospho-CoA kinase	-
NRL09_RS18955 (NRL09_18960)	zapD	4063666..4064388 (+)	723	WP_010675825.1	cell division protein ZapD	-
NRL09_RS18960 (NRL09_18965)	yacG	4064399..4064593 (+)	195	WP_103858092.1	DNA gyrase inhibitor YacG	-
NRL09_RS18965 (NRL09_18970)	mutT	4064651..4065055 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
NRL09_RS18970 (NRL09_18975)	-	4065064..4066249 (-)	1186	Protein_3665	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32113.21 Da Isoelectric Point: 6.8280

                                >NTDB_id=716254 NRL09_RS18945 WP_052814465.1 4062120..4062995(+) (pilD) [Aeromonas caviae strain BC11]

MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALSPGWGTLAALLLTWTLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLRNHHQGKPIPFGPYLTIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=716254 NRL09_RS18945 WP_052814465.1 4062120..4062995(+) (pilD) [Aeromonas caviae strain BC11]

ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG

CAGCTTCCTGAACGTCGTTATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG

GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC

CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT

TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTTCCCCCGGCTGGG

GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT

CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT

CGGCGCCATGGCGGGTTACCTGGTGCTCTGGAGCCTCTACTGGACCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGT

ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG

CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA

TCTCACCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.49	98.282	0.595
pilD	Vibrio campbellii strain DS40M4	56.552	99.656	0.564
pilD	Acinetobacter baumannii D1279779	51.613	95.876	0.495
pilD	Acinetobacter nosocomialis M2	51.613	95.876	0.495
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464

Detailed information NTG0716254