Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NRL37_RS05410 Genome accession   NZ_CP102328
Coordinates   1150382..1151977 (-) Length   531 a.a.
NCBI ID   WP_268194219.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain BC12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145382..1156977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL37_RS05395 (NRL37_05395) - 1147465..1147881 (+) 417 WP_326493230.1 type IV pilin protein -
  NRL37_RS05400 (NRL37_05400) thiO 1147932..1149026 (+) 1095 WP_268194218.1 glycine oxidase ThiO -
  NRL37_RS05405 (NRL37_05405) pilR 1149039..1150379 (-) 1341 WP_044410357.1 sigma-54-dependent transcriptional regulator Regulator
  NRL37_RS05410 (NRL37_05410) pilS 1150382..1151977 (-) 1596 WP_268194219.1 ATP-binding protein Regulator
  NRL37_RS05415 (NRL37_05415) - 1151964..1152200 (-) 237 WP_172432732.1 PP0621 family protein -
  NRL37_RS05420 (NRL37_05420) - 1152347..1153345 (-) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  NRL37_RS05425 (NRL37_05425) rluD 1153493..1154464 (+) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NRL37_RS05430 (NRL37_05430) pgeF 1154464..1155189 (+) 726 WP_268194220.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59159.31 Da        Isoelectric Point: 7.8430

>NTDB_id=716192 NRL37_RS05410 WP_268194219.1 1150382..1151977(-) (pilS) [Metapseudomonas otitidis strain BC12]
MASTESPSLASNQIRRIFRLYNLYRLLIGLALVGLISSELDSELLDLARVQLFRNTSWFYLLLNILIALMVRRPQHMLQV
FSLALVDVILLSCIFYAAGGSPSGIGNLIIVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSRPEAANQYVQAGAL
GALCFAGALFVQGISRRLQLSETLAEQRAADVANLEALNALILQRMRTGILVLDSRHRVLLANQAAQAMLGHDGLAGRPL
GPHCPELLTRLEQWWDNPTLRPQSLQPVPDGTVLQPSFVQLQRGEQLDTLIFLDDISQIAQQAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLQESEELEGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRSASPV
GQTLHLETNPGSIQTRMDPHQLTQVLTNLVQNGLRYSAQKHRQGQVWLKLFRDAESDLPILEVMDDGPGVAEEQLHHLFE
PFHTTENKGTGLGLYISRELCESNQARLDYRPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=716192 NRL37_RS05410 WP_268194219.1 1150382..1151977(-) (pilS) [Metapseudomonas otitidis strain BC12]
GTGGCGAGCACTGAGTCGCCCTCCCTGGCGAGCAACCAGATCCGACGGATCTTCCGCCTTTACAACCTGTATCGCCTGCT
CATCGGCCTGGCGCTGGTCGGGTTGATTTCCAGTGAGCTGGACAGCGAGTTGCTGGATCTGGCTCGCGTGCAGCTATTCC
GCAATACCAGCTGGTTCTACCTGCTGCTGAACATCCTTATTGCACTGATGGTGCGCCGCCCCCAGCACATGCTGCAGGTG
TTCAGCCTGGCGCTGGTGGACGTCATCCTGCTGTCCTGCATCTTCTATGCAGCGGGCGGCTCGCCCAGCGGCATCGGCAA
CCTGATCATCGTTGCGGTGGCCATTGCCAACATCCTGCTGCGTGGGCGTATCGGGCTACTGATCGCCGCCGTCGCCGCCA
TCGGGATGATCTACCTGACTTTCTACCTGAGCTTGTCCCGCCCGGAAGCGGCCAACCAGTACGTCCAGGCCGGTGCGCTC
GGTGCCCTGTGCTTTGCAGGCGCCCTGTTCGTGCAGGGCATCAGCCGGCGTCTGCAGTTGAGCGAGACCCTGGCCGAGCA
GCGTGCTGCCGACGTGGCCAATCTGGAAGCGCTCAACGCGCTCATTCTGCAGCGCATGCGCACGGGCATCCTGGTGCTTG
ATAGCCGCCACAGGGTGTTGCTGGCCAACCAGGCCGCCCAGGCGATGCTGGGGCACGACGGGCTGGCGGGGCGCCCCCTC
GGGCCGCACTGCCCTGAGCTGCTCACGCGCCTGGAGCAGTGGTGGGACAACCCGACCCTGCGCCCCCAGAGCCTGCAGCC
GGTACCCGATGGCACGGTGCTACAGCCCAGCTTCGTCCAGCTGCAGCGTGGTGAGCAGCTGGATACGCTGATCTTCCTTG
ACGACATCTCGCAGATCGCCCAGCAGGCGCAGCAGCTGAAGCTGGCCTCCCTCGGGCGGCTGACCGCCGGTATCGCCCAT
GAGATCCGCAATCCCCTGGGTGCCATCAGTCATGCCGCCCAGCTGTTGCAGGAGTCCGAAGAGCTGGAGGGGCCCGACCG
CCGCCTGGCGCAGATCATCCAGGACCATTCCCGGCGGATGAACCTCGTCATCGAGAACGTCCTGCAACTGTCGCGGCGCC
GCCAGTCGGAACCCCAGTTGCTGGATCTCAAGTACTGGCTGCACCGATTCGCCAGCGAGTTCCGCAGCGCCTCACCGGTG
GGCCAGACTCTTCATCTTGAGACCAATCCGGGCAGCATCCAGACCCGCATGGACCCCCACCAGCTCACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAGCATCGCCAGGGGCAGGTCTGGCTGAAACTCTTCCGTGACG
CCGAGAGCGACCTGCCCATACTGGAAGTGATGGACGACGGCCCAGGCGTCGCCGAGGAGCAGCTCCATCACCTGTTCGAG
CCCTTCCACACCACGGAGAACAAGGGCACCGGGCTCGGCCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCCCG
CCTTGACTATCGACCCCGCGAAGGCGGCGGCAGCTGTTTCCGCATCACCTTCGCCCATCCGCGAAAACTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(203-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.686

98.493

0.667