Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NRL37_RS05405 Genome accession   NZ_CP102328
Coordinates   1149039..1150379 (-) Length   446 a.a.
NCBI ID   WP_044410357.1    Uniprot ID   A0A0D6SA47
Organism   Metapseudomonas otitidis strain BC12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144039..1155379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL37_RS05390 (NRL37_05390) - 1144367..1147456 (+) 3090 WP_268194217.1 pilus assembly protein -
  NRL37_RS05395 (NRL37_05395) - 1147465..1147881 (+) 417 WP_326493230.1 type IV pilin protein -
  NRL37_RS05400 (NRL37_05400) thiO 1147932..1149026 (+) 1095 WP_268194218.1 glycine oxidase ThiO -
  NRL37_RS05405 (NRL37_05405) pilR 1149039..1150379 (-) 1341 WP_044410357.1 sigma-54-dependent transcriptional regulator Regulator
  NRL37_RS05410 (NRL37_05410) pilS 1150382..1151977 (-) 1596 WP_268194219.1 ATP-binding protein Regulator
  NRL37_RS05415 (NRL37_05415) - 1151964..1152200 (-) 237 WP_172432732.1 PP0621 family protein -
  NRL37_RS05420 (NRL37_05420) - 1152347..1153345 (-) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  NRL37_RS05425 (NRL37_05425) rluD 1153493..1154464 (+) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NRL37_RS05430 (NRL37_05430) pgeF 1154464..1155189 (+) 726 WP_268194220.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49956.26 Da        Isoelectric Point: 6.0001

>NTDB_id=716191 NRL37_RS05405 WP_044410357.1 1149039..1150379(-) (pilR) [Metapseudomonas otitidis strain BC12]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGESDEEASVDSRLLGESPPMRALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRASHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAHGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLFYRLNVIELGVPPLRERREDIPRLADV
MLKRLAEACSLPAATLTRDALEKLKTYRFPGNVRELENMLERAYTLCENDQIQPHDLRFTEAAGAAEGGEADLAKIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=716191 NRL37_RS05405 WP_044410357.1 1149039..1150379(-) (pilR) [Metapseudomonas otitidis strain BC12]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCCCGCGAACCGTTCGACCTCTGCCTCACGG
ACATGCGCCTGCCCGATGGCACCGGGCAGGAGCTGGTGCAGTACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCCATG
ATCACGGCCTACGGCAGCCTGGATACCGCCATCAATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACCAAGCCGGTGGA
CCTCGGCCGTCTGCGCGAACTGGTGGCGACTGCCCTGCGGCTGCGCAGCGGCGAATCGGACGAAGAGGCCAGCGTCGACA
GCCGCCTGTTGGGCGAATCGCCCCCCATGCGGGCGTTGCGCAACCAGATCCAGAAGCTTGCCCGCAGCCAGGCGCCCGTC
TACATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCACGACTCATCCATGAGCAGGGCCCGCGCGCCAGCCACCC
CTTCGTGCCGGTGAACTGCGGCGCCATTCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CTGGTGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCCACGGTGGCACCCTGTTCCTCGACGAAGTGGCAGACCTG
CCGCTGCCCATGCAGGTCAAGCTGCTGCGGGCCATTCAGGAGAAGGCGGTACGCGCCGTCGGCGGCCAGCAGGAAGTGGT
GGTGGACGTGCGCATCCTCAGTGCCACTCACAAGGACCTGGCTGCCGAGGTGGCTGCCGGGCGATTCCGCCAGGACCTGT
TCTACCGGCTCAACGTGATCGAACTGGGGGTGCCGCCGTTGCGTGAGCGCCGCGAAGACATTCCCCGCCTGGCGGACGTG
ATGCTCAAGCGCCTGGCCGAAGCCTGCTCGCTGCCGGCCGCGACCCTTACCCGTGATGCGCTGGAGAAGCTCAAGACCTA
CCGCTTCCCCGGGAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACCCTGTGCGAAAACGACCAGATCCAGC
CCCATGACCTGCGCTTCACTGAGGCTGCTGGCGCGGCAGAGGGCGGCGAGGCGGACCTCGCCAAGATCGACAACCTCGAG
GACTATCTCGAGGAGATCGAGCGCAAGCTAATCATGCAGGCCCTTGAAGAGACCCGTTGGAACCGCACGGCAGCAGCCCA
GCGCCTTGGGCTGACCTTTCGTTCCATGCGTTACAGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6SA47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.565

100

0.886
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518